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Publication Date:
May 2010
ISSN:
1862-278X
DOI:
10.1515/bmt.2010.014

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Editor-in-Chief: Dössel, Olaf

Editorial Board Member: Augat, Peter / Bösiger, Peter / Gehring, Hartmut / Haueisen, Jens / Leonhardt, Steffen / Niederlag, Wolfgang / Radermacher, Klaus M. / Schmitz, Georg / Witte, Herbert / Boenick, Ulrich / Lenthe, Harry / Penzel, Thomas / Clasbrummel, Bernhard / Robitzki, Andrea A. / Scholz, Jörg / Snedeker, Jess G. / Wintermantel, Erich / Jockenhoevel, Stefan / Gilly, Hermann / Werner, Jürgen / Plank, Gernot / Stieglitz, Thomas

6 Issues per year

Increased IMPACT FACTOR 2011: 0.855
5-year IMPACT FACTOR: 0.745
Rank 56 out of 72 in category Biomedical Engineering and rank 20 out of 23 in category Medical Informatics in the 2011 Thomson Reuters Journal Citation Report/Science Edition

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Control and data acquisition software for high-density CMOS-based microprobe arrays implementing electronic depth control

Karsten Seidl1 / Tom Torfs2 / Patrick A. De Mazière3 / Gert Van Dijck3 / Richard Csercsa4 / Balazs Dombovari5 / Yohanes Nurcahyo1 / Hernando Ramirez1 / Marc M. Van Hulle3 / Guy A. Orban3 / Oliver Paul1 / Istvan Ulbert4, 5 / Herc Neves2 / Patrick Ruther1

1Department of Microsystems Engineering (IMTEK), Microsystem Materials Laboratory, University of Freiburg, Freiburg, Germany

2Interuniversity Microelectronics Center (IMEC), Leuven, Belgium

3Laboratorium voor Neuro- en Psychofysiologie, K.U. Leuven, Leuven, Belgium

4Institute for Psychology, Hungarian Academy of Sciences, Budapest, Hungary

5Faculty of Information Technology, Peter Pazmany Catholic University, Budapest, Hungary

Corresponding author: Karsten Seidl, Department of Microsystems Engineering-IMTEK, University of Freiburg, Georges-Koehler-Allee 103, D-79110 Freiburg, Germany Phone: +49-761-203-7202 Fax: +49-761-203-7192

Citation Information: Biomedizinische Technik/Biomedical Engineering. Volume 55, Issue 3, Pages 183–191, ISSN (Online) 1862-278X, ISSN (Print) 0013-5585, DOI: 10.1515/bmt.2010.014, May 2010

Publication History:
Received:
2009-03-05
Accepted:
2010-01-26
Published Online:
2010-05-05

Abstract

This paper presents the NeuroSelect software for managing the electronic depth control of cerebral CMOS-based microprobes for extracellular in vivo recordings. These microprobes contain up to 500 electronically switchable electrodes which can be appropriately selected with regard to specific neuron locations in the course of a recording experiment. NeuroSelect makes it possible to scan the electrodes electronically and to (re)select those electrodes of best signal quality resulting in a closed-loop design of a neural acquisition system. The signal quality is calculated by the relative power of the spikes compared with the background noise. The spikes are detected by an adaptive threshold using a robust estimator of the standard deviation. Electrodes can be selected in a manual or semi-automatic mode based on the signal quality. This electronic depth control constitutes a significant improvement for multielectrode probes, given that so far the only alternative has been the fine positioning by mechanical probe translation. In addition to managing communication with the hardware controller of the probe array, the software also controls acquisition, processing, display and storage of the neural signals for further analysis.

Keywords: electronic depth control; neural recording; silicon microprobes; three-dimensional (3D) probe arrays

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