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Publication Date:
February 2006
ISSN:
1544-6115
DOI:
10.2202/1544-6115.1147

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Editor-in-Chief: Stumpf, Michael P.H.

Editorial Board Member: Beaumont, Mark / Binder, Harald / Gupta, Mayetri / Hubbard, Alan E. / Husmeier, Dirk / Ji, Hongkai / Keles, Sunduz / Kerr, Kathleen / Lazzeroni, Laura / Lin, Shili / Ma, Ping / Marjoram, Paul / Mertens, Bart / Nerman, Olle / G. Petretto, Enrico / Plagnol, Vincent / Purdom, Elizabeth / Robin, Stéphane / Rzhetsky, Andrey / Sanguinetti, Guido / van der Laan, Mark J. / von Haeseler, Arndt / Weeks, Daniel E. / Wiuf, Carsten / Zhao, Hongyu

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Rank 27 out of 116 in category Statistics & Probability in the 2011 Thomson Reuters Journal Citation Report/Science Edition

Dimension Reduction for Classification with Gene Expression Microarray Data

Jian J Dai / Linh Lieu / David Rocke

1University of California, Davis

1University of California, Los Angeles

1University of California, Davis

Citation Information: Statistical Applications in Genetics and Molecular Biology. Volume 5, Issue 1, Pages –, ISSN (Online) 1544-6115, DOI: 10.2202/1544-6115.1147, February 2006

Publication History:
Published Online:
2006-02-24

An important application of gene expression microarray data is classification of biological samples or prediction of clinical and other outcomes. One necessary part of multivariate statistical analysis in such applications is dimension reduction. This paper provides a comparison study of three dimension reduction techniques, namely partial least squares (PLS), sliced inverse regression (SIR) and principal component analysis (PCA), and evaluates the relative performance of classification procedures incorporating those methods. A five-step assessment procedure is designed for the purpose. Predictive accuracy and computational efficiency of the methods are examined. Two gene expression data sets for tumor classification are used in the study.

Keywords: partial least squares; sliced inverse regression; feature extraction; gene expression; tumor classification

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