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Licensed Unlicensed Requires Authentication Published by De Gruyter June 10, 2016

Fusion proteins of an enoate reductase and a Baeyer-Villiger monooxygenase facilitate the synthesis of chiral lactones

  • Christin Peters , Florian Rudroff , Marko D. Mihovilovic and Uwe T. Bornscheuer EMAIL logo
From the journal Biological Chemistry

Abstract

Nature uses the advantages of fusion proteins for multi-step reactions to facilitate the metabolism in cells as the conversion of substrates through intermediates to the final product can take place more rapidly and with less side-product formation. In a similar fashion, also for enzyme cascade reactions, the fusion of biocatalysts involved can be advantageous. In the present study, we investigated fusion of an alcohol dehydrogenase (ADH), an enoate reductase (ERED) and a Baeyer-Villiger monooxygenase (BVMO) to enable the synthesis of (chiral) lactones starting from unsaturated alcohols as substrates. The domain order and various linkers were studied to find optimal conditions with respect to expression levels and enzymatic activities. Best results were achieved for the ERED xenobiotic reductase B (XenB) from Pseudomonas putida and the cyclohexanone monooxygenase (CHMO) from Acinetobacter sp., whereas none of the ADHs studied could be fused successfully. This fusion protein together with separately supplied ADH resulted in similar reaction rates in in vivo biocatalysis reactions. After 1.5 h we could detect 40% more dihydrocarvone lactone in in vivo reactions with the fusion protein and ADH then with the single enzymes.


Dedicated to Professor Romas J. Kazlauskas on the occasion of his 60th birthday.


Acknowledgments

We thank the DFG (grant no Bo1862/6-1) and the FWF (grant no. I723-N17) for financial support.

References

Chaparro-Riggers, J.F., Rogers, T.A., Vazquez-Figueroa, E., Polizzi, K.M., and Bommarius, A.S. (2007). Comparison of three enoate reductases and their potential use for biotransformations. Adv. Synth. Catal. 349, 1521–1531.10.1002/adsc.200700074Search in Google Scholar

Chung, C.T., Niemela, S.L., and Miller, R.H. (1989). One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc. Natl. Acad. Sci. USA 86, 2172–2175.10.1073/pnas.86.7.2172Search in Google Scholar PubMed PubMed Central

Donoghue, N.A., Norris, D.B., and Trudgill, P.W. (1976). The purification and properties of cyclohexanone oxygenases from Nocardia globerula CL1 and Acinetobacter NCIB 9871. Eur. J. Biochem. 63, 175–192.10.1111/j.1432-1033.1976.tb10220.xSearch in Google Scholar PubMed

Dueber, J.E., Wu, G.C., Malmirchegini, G.R., Moon, T.S., Petzold, C.J., Ullal, A.V., Prather, K.L.J., and Keasling, J.D. (2009). Synthetic protein scaffolds provide modular control over metabolic flux. Nat. Biotechnol. 27, 753–759.10.1038/nbt.1557Search in Google Scholar PubMed

Geneious version (6.1) created by Biomatters. Available at http://www.geneious.com/.Search in Google Scholar

Jeon, E.-Y., Baek, A.H., Bornscheuer, U., and Park, J.-B. (2015). Enzyme fusion for whole-cell biotransformation of long-chain sec-alcohols into esters. Appl. Microbiol. Biotechnol. 99, 6267–6275.10.1007/s00253-015-6392-9Search in Google Scholar PubMed

Karabec, M., Lyskowski, A., Tauber, K.C., Steinkellner, G., Kroutil, W., Grogan, G., and Gruber, K. (2010). Structural insights into substrate specificity and solvent tolerance in alcohol dehydrogenase ADH-‘A’ from Rhodococcus ruber DSM 44541. Chem. Commun. 46, 6314–6316.10.1039/c0cc00929fSearch in Google Scholar PubMed

Li, C., Wen, A., Shen, B., Lu, J., Huang, Y., and Chang, Y. (2011). FastCloning: a highly simplified, purification-free, sequence- and ligation-independent PCR cloning method. BMC Biotechnol. 11, 92.10.1186/1472-6750-11-92Search in Google Scholar PubMed PubMed Central

Li, Y., Chen, H., Qu, F., Yan, L., Li, B., Yue, J., Sun, F., Mao, Y., Zhang, J., Wu, X., et al. (2013). Fusion protein as well as coding gene and application thereof. Chinese Patent Application. CN 201310028774.Search in Google Scholar

Li, B., Li, Y., Bai, D., Zhang, X., Yang, H., Wang, J., Liu, G., Yue, J., Ling, Y., Zhou, D., et al. (2014). Whole-cell biotransformation systems for reduction of prochiral carbonyl compounds to chiral alcohol in Escherichia coli. Sci. Rep. 4, 6750.10.1038/srep06750Search in Google Scholar PubMed PubMed Central

Milani, M., Pesce, A., Bolognesi, M., Bocedi, A., and Ascenzi, P. (2003). Substrate channeling: molecular bases. Biochem. Mol. Biol. Educ. 31, 228–233.10.1002/bmb.2003.494031040239Search in Google Scholar

Miles, E.W. (2001). Tryptophan synthase: a multienzyme complex with an intramolecular tunnel. Chem. Rec. 1, 140–151.10.1002/tcr.4Search in Google Scholar PubMed

Miles, E.W., Rhee, S., and Davies, D.R. (1999). The molecular basis of substrate channeling. J. Biol. Chem. 274, 12193–12196.10.1074/jbc.274.18.12193Search in Google Scholar PubMed

Oberleitner, N., Peters, C., Muschiol, J., Kadow, M., Saß, S., Bayer, T., Schaaf, P., Iqbal, N., Rudroff, F., Mihovilovic, M.D., et al. (2013). An enzymatic toolbox for cascade reactions: a showcase for an in vivo redox sequence in asymmetric synthesis. ChemCatChem 5, 3524–3528.10.1002/cctc.201300604Search in Google Scholar

Oberleitner, N., Peters, C., Rudroff, F., Bornscheuer, U.T., and Mihovilovic, M.D. (2014). In vitro characterization of an enzymatic redox cascade composed of an alcohol dehydrogenase, an enoate reductases and a Baeyer-Villiger monooxygenase. J. Biotechnol. 192(Pt B), 393–399.10.1016/j.jbiotec.2014.04.008Search in Google Scholar PubMed PubMed Central

Opperman, D.J. and Reetz, M.T. (2010). Towards practical Baeyer–Villiger-monooxygenases: design of cyclohexanone monooxygenase mutants with enhanced oxidative stability. ChemBioChem 11, 2589–2596.10.1002/cbic.201000464Search in Google Scholar PubMed

Pérez-Arellano, I., Carmona-Álvarez, F., Martínez, A.I., Rodríguez-Díaz, J., and Cervera, J. (2010). Pyrroline-5-carboxylate synthase and proline biosynthesis: from osmotolerance to rare metabolic disease. Protein Sci. 19, 372–382.10.1002/pro.340Search in Google Scholar PubMed PubMed Central

Peters, C., Kölzsch, R., Kadow, M., Skalden, L., Rudroff, F., Mihovilovic, M.D., and Bornscheuer, U.T. (2014). Identification, characterization, and application of three enoate reductases from Pseudomonas putida in in vitro enzyme cascade reactions. ChemCatChem 6, 1021–1027.10.1002/cctc.201300957Search in Google Scholar

Sachdev, D. and Chirgwin, J.M. (1998). Order of fusions between bacterial and mammalian proteins can determine solubility in Escherichia coli. Biochem. Biophys. Res. Commun. 244, 933–937.10.1006/bbrc.1998.8365Search in Google Scholar PubMed

Sachdev, D. and Chirgwin, J. (1999). Properties of soluble fusions between mammalian aspartic proteinases and bacterial maltose-binding protein. J. Protein Chem. 18, 127–136.10.1023/A:1020663903669Search in Google Scholar

Schlieben, N.H., Niefind, K., Müller, J., Riebel, B., Hummel, W., and Schomburg, D. (2005). Atomic resolution structures of R-specific alcohol dehydrogenase from Lactobacillus brevis provide the structural bases of its substrate and cosubstrate specificity. J. Mol. Biol. 349, 801–813.10.1016/j.jmb.2005.04.029Search in Google Scholar PubMed

Schmidt, S., Genz, M., Balke, K., and Bornscheuer, U.T. (2015). The effect of disulfide bond introduction and related Cys/Ser mutations on the stability of a cyclohexanone monooxygenase. J. Biotechnol. 214, 199–211.10.1016/j.jbiotec.2015.09.026Search in Google Scholar PubMed

Sugimoto, M., Esaki, N., Tanaka, H., and Soda, K. (1989). A simple and efficient method for the oligonucleotide-directed mutagenesis using plasmid DNA template and phosphorothioate-modified nucleotide. Anal. Biochem. 179, 309–311.10.1016/0003-2697(89)90134-6Search in Google Scholar

Torres Pazmiño, D.E., Snajdrova, R., Baas, B.J., Ghobrial, M., Mihovilovic, M.D., and Fraaije, M.W. (2008). Self-sufficient Baeyer-Villiger monooxygenases: effective coenzyme regeneration for biooxygenation by fusion engineering. Angew. Chem. Int. Ed. 47, 2275–2278.10.1002/anie.200704630Search in Google Scholar

Torres Pazmiño, D.E., Riebel, A., de Lange, J., Rudroff, F., Mihovilovic, M.D., and Fraaije, M.W. (2009). Efficient biooxidations catalyzed by a new generation of self-sufficient Baeyer–Villiger monooxygenases. ChemBioChem 10, 2595–2598.10.1002/cbic.200900480Search in Google Scholar

van Beek, H.L., de Gonzalo, G., and Fraaije, M.W. (2012). Blending Baeyer-Villiger monooxygenases: using a robust BVMO as a scaffold for creating chimeric enzymes with novel catalytic properties. Chem. Commun. 48, 3288–3290.10.1039/c2cc17656dSearch in Google Scholar

van Dillewijn, P., Wittich, R.-M., Caballero, A., and Ramos, J.-L. (2008). Subfunctionality of hydride transferases of the old yellow enzyme family of flavoproteins of Pseudomonas putida. Appl. Environ. Microbiol. 74, 6703–6708.10.1128/AEM.00386-08Search in Google Scholar

Vandeyar, M.A., Weiner, M.P., Hutton, C.J., and Batt, C.A. (1988). A simple and rapid method for the selection of oligodeoxynucleotide-directed mutants. Gene 65, 129–133.10.1016/0378-1119(88)90425-8Search in Google Scholar

Weckbecker, A. and Hummel, W. (2006). Cloning, expression, and characterization of an (R)-specific alcohol dehydrogenase from Lactobacillus kefir. Biocatal. Biotransform. 24, 380–389.10.1080/10242420600893827Search in Google Scholar

Wheeldon, I., Minteer, S.D., Banta, S., Barton, S.C., Atanassov, P., and Sigman, M. (2016). Substrate channelling as an approach to cascade reactions. Nat. Chem. 8, 299–309.10.1038/nchem.2459Search in Google Scholar PubMed

Whitehouse, C.J.C., Bell, S.G., and Wong, L.-L. (2012). P450BM3 (CYP102A1): connecting the dots. Chem. Soc. Rev. 41, 1218–1260.10.1039/C1CS15192DSearch in Google Scholar

Yachnin, B.J., Sprules, T., McEvoy, M.B., Lau, P.C., and Berghuis, A.M. (2012). The substrate-bound crystal structure of a Baeyer-Villiger monooxygenase exhibits a Criegee-like conformation. J. Am. Chem. Soc. 134, 7788–7795.10.1021/ja211876pSearch in Google Scholar PubMed PubMed Central

Yu, K., Liu, C., Kim, B.-G., and Lee, D.-Y. (2015). Synthetic fusion protein design and applications. Biotechnol. Adv. 33, 155–164.10.1016/j.biotechadv.2014.11.005Search in Google Scholar PubMed

Zambianchi, F., Pasta, P., Carrea, G., Colonna, S., Gaggero, N., and Woodley, J.M. (2002). Use of isolated cyclohexanone monooxygenase from recombinant Escherichia coli as a biocatalyst for Baeyer–Villiger and sulfide oxidations. Biotechnol. Bioeng. 78, 489–496.10.1002/bit.10207Search in Google Scholar PubMed


Supplemental Material:

The online version of this article (DOI: 10.1515/hsz-2016-0150) offers supplementary material, available to authorized users.


Received: 2016-3-15
Accepted: 2016-6-8
Published Online: 2016-6-10
Published in Print: 2017-1-1

©2017 Walter de Gruyter GmbH, Berlin/Boston

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