Reproducibility in the Field: Transparency, Version Control and Collaboration on the Project Panormos Survey

References

Alcock, S., & Cherry, J. (Eds.). (2004). Side-by-side Survey: Comparative Regional Studies in the Mediterranean World. Oxford: Oxbow.Search in Google Scholar

American Association for the Advancement of Science. (2016). Ancient History, Modern Destruction: Assessing the Status of Syria’s Tentative World Heritage Sites Using High-Resolution Satellite Imagery. https://www.aaas.org/page/ancienthistory-modern-destruction-assessing-status-syria-s-tentative-world-heritage-sites-7 (May 18, 2017).Search in Google Scholar

Anokwa, Y., Hartung, C., Brunette, W., Lerer, A., & Borriello, G. (2009). Open Source Data Collection in the Developing World. IEEE Computer, 97-99. http://doi.ieeecomputersociety.org/10.1109/MC.2009.328.Search in Google Scholar

Bartling, S., & Friesike, S. (Eds.). (2014). Opening Science. The Evolving Guide on How the Internet is Changing Research, Collaboration and Scholarly Publishing. Springer. https://doi.org/10.1007/978-3-319-00026-8.10.1007/978-3-319-00026-8Search in Google Scholar

Bazerman, C. (1983). Scientific Writing as a Social Act: A Review of the Literature of the Sociology of Science. In Paul V. Anderson R. John Brockmann & C. R. Miller (Eds.), New essays in technical and scientific communication: Research, theory, practice (pp. 156-184). Amityville: Baywood. Search in Google Scholar

Bevan, A. (2012). Value, Authority and the Open Society. Some Implications for Digital and Online Archaeology. In C. Bonacchi (Ed.), Archaeology and digital communication: Towards strategies of public engagement (pp. 1-14). London: Archetype.Search in Google Scholar

Bevan, A. (2015). The data deluge. Antiquity, 89, 1473-1484. https://doi.org/10.15184/aqy.2015.102.10.15184/aqy.2015.102Search in Google Scholar

Bissell, M. (2013). Reproducibility: the Risks of the Replication Drive. Nature, 593, 333-334. https://doi.org/10.1038/503333a.10.1038/503333aSearch in Google Scholar

Bowers, J. (2011). Six steps to a Better Relationship with Your Future Self. The Political Methodologist, 18(2), 2-8.Search in Google Scholar

Chacon, S., & Straub, B. (2014). Pro Git. https://git-scm.com/book/en/v2 (May 18, 2017).10.1007/978-1-4842-0076-6Search in Google Scholar

Costa, S., Beck, A., Bevan, A., & Ogden, J. (2013). Defining and advocating open data in archaeology. In G. Earl, T. Sly, A. Chrysanthi, P. Murrieta-Flores, C. Papadopoulos, I. Romanowska, & D. Wheatley (Eds.), Archaeology in the Digital Era. Papers from the 40th Annual Conference of Computer Applications and Quantitative Methods in Archaeology (CAA), Southampton, 26-29 March 2012 (pp. 449-456). http://dare.uva.nl/document/516092.Search in Google Scholar

Creative Commons (2013). Responses of Creative Commons to House of Lords Comments Concerning the CC BY License. https://wiki.creativecommons.org/wiki/BIS_committee_UK_OA_Policy#Plagiarism (May 18, 2017).Search in Google Scholar

Düring, B., & Glatz, C. (Eds.). (2016). Kinetic Landscapes. The Cide Archaeological Project: Surveying the Turkish Western Black Sea Region. Warsaw/Berlin: De Gruyter Open. https://doi.org/10.1515/9783110444971.10.1515/9783110444971Search in Google Scholar

Ellis, S. J. (2016). Are We Ready for New (Digital) Ways to Record Archaeological Fieldwork? A Case Study from Pompeii. In E. W. Averett, J. M. Gordon, & D. B. Counts (Eds.), Mobilizing the past for a digital future: The potential of digital archaeology (pp. 51-75). Grand Forks: The Digital Press at the University of North Dakota.Search in Google Scholar

Ersoy, Y., & Koparal, E. (2008). Urla ve Seferihisar İlçeleri Yüzey Araştırması 2007 Yılı çalışmaları. Araştırma Sonuçları Toplantısı, 26(3), 73-9.Search in Google Scholar

Ersoy, Y., Tuna, N., & Koparal, E. (2010). Urla ve Seferihisar İlçeleri Yüzey Araştırması 2009 Yılı Çalışmaları. Araştırma Sonuçları Toplantısı, 28(2), 339-360.Search in Google Scholar

EU. (2016). H2020 Programme - Annotated Model Grant Agreement (Version 2.1.1). https://ec.europa.eu/research/participants/data/ref/h2020/grants_manual/amga/h2020-amga_en.pdf (May 18, 2017).Search in Google Scholar

Fanelli, D. (2013). Redefine misconduct as distorted reporting. Nature, 494, 149. https://doi.org/10.1038/494149a.10.1038/494149aSearch in Google Scholar

Fitzpatrick, K. (2011). Planned obsolescence: Publishing, technology, and the future of the academy. New York: New York University.10.1632/ade.150.41Search in Google Scholar

Germán, D. M., Adams, B., & Hassan, A. E. (2016). Continuously mining distributed version control systems: An empirical study of how linux uses git. Empirical Software Engineering, 21(1), 260-299. https://doi.org/10.1007/s10664-014-9356-2.10.1007/s10664-014-9356-2Search in Google Scholar

Gewin, V. (2013). Turning Point: Carl Boettiger. Nature, 493, 711. https://doi.org/10.1038/nj7434-711a.10.1038/nj7434-711aSearch in Google Scholar

Götz, N., & Marklund, C. (2014). The Paradox of Openness: Transparency and Participation in Nordic Cultures of Consensus. Leiden: Brill.10.1163/9789004281196Search in Google Scholar

Harley, D., Acord, S. K., Earl-Novell, S., Lawrence, S., & King, C. J. (2010). Archaeology Case Study. In Assessing the Future Landscape of Scholarly Communication: An Exploration of Faculty Values and Needs in Seven Disciplines. (pp. 29-136). UC Berkeley: Center for Studies in Higher Education. http://escholarship.org/uc/item/15x7385g.Search in Google Scholar

HEFCE. (2015). Policy for open access in the post-2014 Research Excellence Framework: Updated July 2015. Higher Education Funding Council for England. http://www.hefce.ac.uk/pubs/year/2014/201407/ (May 18, 2017).Search in Google Scholar

Heller, L., The, R., & Bartling, S. (2014). Dynamic Publication Formats and Collaborative Authoring. In S. Bartling & S. Friesike (Eds.), Opening science (pp. 191-211). Springer International Publishing. https://doi.org/10.1007/978-3-319-00026-8_13.10.1007/978-3-319-00026-8_13Search in Google Scholar

Hodder, I. (1999). The Archaeological Process: An Introduction. Oxford: Blackwell.Search in Google Scholar

Hodder, I. (2008). Evaluating Multiple Narratives: Beyond Nationalist, Colonialist, Imperialist Archaeologies. In J. Habu, C. Fawcett, & J. M. Matsunaga (Eds.), Evaluating multiple narratives: Beyond nationalist, colonialist, imperialist archaeologies (pp. 196-200). New York: Springer New York. https://doi.org/10.1007/978-0-387-71825-5_13.10.1007/978-0-387-71825-5_13Search in Google Scholar

Huggett, J. (2015). Digital Haystacks: Open Data and the Transformation of Archaeological Knowledge. In A. T. Wilson and B. Edwards (Ed.), Open source archaeology (pp. 6-29). Warsaw/Berlin: De Gruyter Open. https://doi.org/10.1515/9783110440171-003.10.1515/9783110440171-003Search in Google Scholar

Ihaka, R., & Gentleman, R. (1996). R: A Language for Data Analysis and Graphics. Journal of Computational and Graphical Statistics, 5(3), 299-314.Search in Google Scholar

Journal of Open Archaeology Data. (2017). Research integrity. http://openarchaeologydata.metajnl.com/about/researchintegrity/ (May 25, 2017).Search in Google Scholar

Kansa, E. (2012). Openness and archaeology’s information ecosystem. World Archaeology, 44(4), 498-520. https://doi.org/10.1080/00438243.2012.737575.10.1080/00438243.2012.737575Search in Google Scholar

Kansa, E. (2014). The Need to Humanize Open Science. In S. A. Moore (Ed.), Issues in open research data (pp. 31-58). London: Ubiquity Press. https://doi.org/10.5334/ban.c.10.5334/ban.cSearch in Google Scholar

Kansa, E., & Whitcher Kansa, S. (2013). We All Know That a 14 Is a Sheep: Data Publication and Professionalism in Archaeological Communication. Journal of Eastern Mediterranean Archaeology and Heritage Studies, 1(1), 88-97. https://doi.org/10.1353/ema.2013.0007.Search in Google Scholar

Kansa, E., Whitcher Kansa, S., & Arbuckle, B. (2014). Publishing and Pushing: Mixing Models for Communicating Research Data in Archaeology. International Journal of Digital Curation, 9.1, 57-70. https://doi.org/10.2218/ijdc.v9i1.301.10.2218/ijdc.v9i1.301Search in Google Scholar

Kelty, C. M. (2005). Free Science. In J. Feller, B. Fitzgerald, S. A. Hissam, & K. R. Lakhani (Eds.), Perspectives on free and open source software (pp. 415-430). MIT Press.Search in Google Scholar

Kelty, C. M. (2008). Two Bits: The Cultural Significance of Free Software. Durham: Duke University Press. http://twobits.net/pub/Kelty-TwoBits.pdf.Search in Google Scholar

Kelty, C. M. (2014). Beyond Copyright and Technology: What Open Access can tell us about Precarity, Authority, Innovation, and Automation in the University Today. Cultural Anthropology, 29(2), 203-215. https://doi.org/10.14506/ca29.2.02.10.14506/ca29.2.02Search in Google Scholar

Knorr, K. D., & Knorr, D. W. (1978). From Scenes to Scripts: On the Relationship between Laboratory Research and Published Paper in Science. Vienna: Institute for Advanced Studies.Search in Google Scholar

Knuth, D. E. (1984). Literate Programming. The Computer Journal, 27(2), 97-111. https://doi.org/10.1093/comjnl/27.2.97.10.1093/comjnl/27.2.97Search in Google Scholar

Lagoze, C., Block, W. C., Williams, J., Abowd, J., & Vilhuber, L. (2013). Data management of confidential data. International Journal of Digital Curation, 8(1), 265-278.10.2218/ijdc.v8i1.259Search in Google Scholar

Lake, M. (2012). Open archaeology. World Archaeology, 44(4), 471-478. https://doi.org/10.1080/00438243.2012.748521.10.1080/00438243.2012.748521Search in Google Scholar

Latour, B., & Woolgar, S. (1979). Laboratory Life: The Social Construction of Scientific Facts. Beverley Hills: Sage.Search in Google Scholar

Marwick, B. (2016). Computational Reproducibility in Archaeological Research: Basic Principles and a Case Study of Their Implementation. Journal of Archaeological Method and Theory, 1-27. https://doi.org/10.1007/s10816-015-9272-9.10.1007/s10816-015-9272-9Search in Google Scholar

Masic, I. (2012). Plagiarism in scientific publishing. Acta Informatica Medica, 20(4), 208-213. https://doi.org/10.5455/aim.2012.20.208-213.10.5455/aim.2012.20.208-213Search in Google Scholar

Matthews, R., & Glatz, C. (Eds.). (2009). At Empires’ Edge. Project Paphlagonia Regional Survey in North-Central Turkey. London: British Institute at Ankara.Search in Google Scholar

Morin, A., Urban, J., Adams, P. D., Foster, I., Sali, A., Baker, D., & Sliz, P. (2012). Shining Light into Black Boxes. Science, 336(6078), 159-160. https://doi.org/10.1126/science.1218263.10.1126/science.1218263Search in Google Scholar

Nielsen, M. (2011). An informal definition of openscience. http://www.openscience.org/blog/?p=454 (May 18, 2017).Search in Google Scholar

Nuzzo, R. (2015). How scientists fool themselves - and how they can stop. Nature, 526, 182-185. https://doi.org/10.1038/526182a.10.1038/526182aSearch in Google Scholar

Open Definition. (2016). Conformant license (version 2.1). http://opendefinition.org/licenses/ (May 18, 2017).Search in Google Scholar

R Core Team. (2017). R: A Language and Environment for Statistical Computing. https://www.R-project.org (May 18, 2017).Search in Google Scholar

Schloen, D. (2001). Archaeological Data Models and Web Publication Using XML. Computers and the Humanities, 35(2), 123-152. http://www.jstor.org/stable/30204847.10.1023/A:1002471112790Search in Google Scholar

Schloen, D., & Schloen, S. (2014). Beyond Gutenberg: Transcending the Document Paradigm in Digital Humanities. Digital Humanities Quarterly, 8(4). http://www.digitalhumanities.org/dhq/vol/8/4/000196/000196.html.Search in Google Scholar

Smith, J. (2013). Adapting Git for simple data. https://theodi.org/blog/adapting-git-simple-data (May 14, 2017).Search in Google Scholar

Strupler, N. (2016). Archaeology as Community Enterprise. In S. Campana, R. Scopigno, G. Carpentiero, & M. Cirillo (Eds.), CAA2015 keep the revolution going, proceedings of the 43 rd annual conference on computer applications and quantitative methods in archaeology (Vol. 1, pp. 1015-1018).Search in Google Scholar

The Free Software Foundation. (2016). Various Licenses and Comments about Them. https://www.gnu.org/licenses/license-list.en.html (May 18, 2017).Search in Google Scholar

Vinck, D., & Clivaz, C. (2014). The Humanities Unbound. Knowledge and Culture Reinvented Outside the Book. Revue d’anthropologie des connaissances, 8(4), a-w. https://doi.org/10.3917/rac.025.0682.10.3917/rac.025.0682Search in Google Scholar

Wallis, J., Rolando, E., & Borgman, C. (2013). If We Share Data, Will Anyone Use Them? Data Sharing and Reuse in the Long Tail of Science and Technology. PLoS ONE, 8(7), e67332. https://doi.org/10.1371/journal.pone.0067332.10.1371/journal.pone.0067332Search in Google Scholar

Wallrodt, J. (2016). Why Paperless: Technology and Changes in Archaeological Practice, 1996-2016. In E. W. Averett, J. M. Gordon, & D. B. Counts (Eds.), Mobilizing the past for a digital future: The potential of digital archaeology (pp. 33-50). Grand Forks: The Digital Press at the University of North Dakota.Search in Google Scholar

Xie, Y. (2015). Dynamic Documents with R and knitr (2nd ed.). Boca Raton, Florida: Chapman; Hall/CRC.Search in Google Scholar

Xie, Y. (2016). Knitr: A General-Purpose Package for Dynamic Report Generation in R (R package version 1.12). http://yihui.name/knitr/.Search in Google Scholar