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Accessible Unlicensed Requires Authentication Published by De Gruyter October 30, 2018

Quantitative measurement of olivine composition in three dimensions using helical-scan X-ray micro-tomography

Matthew J. Pankhurst, Nghia T. Vo, Alan R. Butcher, Haili Long, Hongchang Wang, Sara Nonni, Jason Harvey, Guđmundur Guđfinnsson, Ronald Fowler, Robert Atwood, Richard Walshaw and Peter D. Lee
From the journal American Mineralogist

Abstract

Olivine is a key constituent in the silicate Earth; its composition and texture informs petrogenetic understanding of numerous rock types. Here we develop a quantitative and reproducible method to measure olivine composition in three dimensions without destructive analysis, meaning full textural context is maintained. The olivine solid solution between forsterite and fayalite was measured using a combination of three-dimensional (3D) X‑ray imaging techniques, 2D backscattered electron imaging, and spot-analyses using wavelength-dispersive electron probe microanalysis. The linear attenuation coefficient of natural crystals across a range of forsterite content from ~73–91 mol% were confirmed to scale linearly with composition using 53, 60, and 70 kV monochromatic beams at I12-JEEP beamline, Diamond Light Source utilizing the helical fly-scan acquisition. A polychromatic X‑ray source was used to scan the same crystals, which yielded image contrast equivalent to measuring the mol% of forsterite with an accuracy of <1.0%. X‑ray tomography can now provide fully integrated textural and chemical analysis of natural samples containing olivine, which will support 3D and 3D+time petrologic modeling. The study has revealed >3 mm domains within a large crystal of San Carlos forsterite that varies by ~2 Fo mol%. This offers a solution to an outstanding question of inter-laboratory standardization, and also demonstrates the utility of 3D, non-destructive, chemical measurement. To our knowledge, this study is the first to describe the application of XMT to quantitative chemical measurement across a mineral solid solution. Our approach may be expanded to calculate the chemistry of other mineral systems in 3D, depending upon the number, chemistry, and density of end-members.

Acknowledgments

This work was conducted under the auspices of an AXA Research Fund Fellowship to M.J.P. and NERC grant (U.K.) grant NE/M013561/1. Synchrotron tomography was undertaken on I12 at Diamond Light Source under proposals EE14033-1 and EE14033-2. The British Natural History Museum, Thor Thordarson, Godfrey Fitton, Michael Turner, and Iain Smith are gratefully acknowledged for providing samples of olivine and/or olivine-rich naturally occurring rocks. Tom Shea and Tomoaki Morishita are thanked for their thoughtful and thorough reviews that improved the manuscript. Julia Hammer is thanked for her editorial handling.

References cited

Alvarez-Murga, M., Perrillat, J.P., Le Godec, Y., Bergame, F., Philippe, J., King, A., Guignot, N., Mezouar, M., and Hodeau, J.L. (2017) Development of synchrotron X‑ray micro-tomography under extreme conditions of pressure and temperature. Journal of Synchrotron Radiation, 24, 240–247.Search in Google Scholar

Anderson, P., Levinkind, M., and Elliott, J.C. (1998) Scanning microradiographic studies of rates of in vitro demineralization in human and bovine dental enamel. Archives of Oral Biology, 43, 649–656.Search in Google Scholar

Baker, D.R., Brun, F., O’Shaughnessy, C., Mancini, L., Fife, J.L., and Rivers, M. (2012) A four-dimensional X‑ray tomographic microscopy study of bubble growth in basaltic foam. Nature Communications, 3, 1135.Search in Google Scholar

Berger, M.J., Hubbell, J., Seltzer, S., Chang, J., Coursey, J., Sukumar, R., Zucker, D., and Olsen, K. (2016) XCOM: Photon cross sections database. NIST Standard reference database, 8, 3587–3597.Search in Google Scholar

Bloss, F. (1952) Relationship between density and composition in mol per-cent for some solid solution series. American Mineralogist, 37, 966–981.Search in Google Scholar

Bryon, D., Atherton, M., and Hunter, R. (1995) The interpretation of granitic textures from serial thin sectioning, image analysis and three-dimensional reconstruction. Mineralogical Magazine, 59, 203–211.Search in Google Scholar

Cai, B., Karagadde, S., Yuan, L., Marrow, T.J., Connolley, T., and Lee, P.D. (2014) In situ synchrotron tomographic quantification of granular and intragranular deformation during semi-solid compression of an equiaxed dendritic Al-Cu alloy. Acta Materialia, 76, 371–380.Search in Google Scholar

Chaussidon, M., Deng, Z., Villeneuve, J., Moureau, J., Watson, B., Richter, F., and Moynier, F. (2017) In situ analysis of non-traditional isotopes by SIMS and LA–MC–ICP–MS: Key aspects and the example of mg isotopes in olivines and silicate glasses. Reviews in Mineralogy and Geochemistry, 82, 127–163.Search in Google Scholar

Cnudde, V., and Boone, M.N. (2013) High-resolution X‑ray computed tomography in geosciences: A review of the current technology and applications. Earth-Science Reviews, 123, 1–17.Search in Google Scholar

Cooper, M.R., and Hunter, R.H. (1995) Precision serial lapping, imaging and three dimensional reconstruction of minus-cement and post-cementation intergranular pore-systems in the Penrith Sandstone of north-western England. Mineralogical Magazine, 59, 213–220.Search in Google Scholar

Davis, G.R., Evershed, A.N.Z., and Mills, D. (2015) Characterisation of materials: determining density using X‑ray microtomography. Materials and Science and Technology, 31, 162–166.Search in Google Scholar

Deer, W., Howie. RA, and Zussman, J. (1982) Rock-forming minerals, vol. 1A; orthosilicates, 919 p. Longman, U.K.Search in Google Scholar

Deer, W., Howie. RA, and Zussman, J. (1992) An Introduction to the Rock-Forming Minerals. Longman, London.Search in Google Scholar

Denison, C., and Carlson, W.D. (1997) Three-dimensional quantitative textural analysis of metamorphic rocks using high-resolution computed X‑ray tomography: Part II. Application to natural samples. Journal of Metamorphic Geology, 15, 45–57.Search in Google Scholar

Donovan, J., Kremser, D., and Fournelle, J. (2012) Probe for EPMA: acquisition, automation and analysis. Probe Software, Inc., Eugene, Oregon.Search in Google Scholar

Drakopoulos, M., Connolley, T., Reinhard, C., Atwood, R., Magdysyuk, O., Vo, N., Hart, M., Connor, L., Humphreys, B., and Howell, G. (2015) I12: The joint engineering, environment and processing (JEEP) beamline at diamond light source. Journal of Synchrotron Radiation, 22, 828–838.Search in Google Scholar

Egorova, V., and Latypov, R. (2013) Mafic–ultramafic sills: New insights from M- and S-shaped mineral and whole-rock compositional profiles. Journal of Petrology, 54, 2155–2191.Search in Google Scholar

Erdmann, S., Scaillet, B., Martel, C., and Cadoux, A. (2014) Characteristic textures of recrystallized, peritectic, and primary magmatic olivine in experimental samples and natural volcanic rocks. Journal of Petrology, 55, 2377–2402.Search in Google Scholar

Farkaš, J., Chrastný, V., Novák, M., Čadkova, E., Pašava, J., Chakrabarti, R., Jacobsen, S.B., Ackerman, L., and Bullen, T.D. (2013) Chromium isotope variations (δ53/52Cr) in mantle-derived sources and their weathering products: Implications for environmental studies and the evolution of δ53/52Cr in the Earth’s mantle over geologic time. Geochimica et Cosmochimica Acta, 123, 74–92.Search in Google Scholar

Flannery, B.P., Deckman, H.W., Roberge, W.G., and D’Amico, K.L. (1987) Three-dimensional X-ray microtomography. Science, 237, 1439–1444.Search in Google Scholar

Fonseca, J., O’Sullivan, C., Coop, M.R., and Lee, P.D. (2013) Quantifying the evolution of soil fabric during shearing using directional parameters. Geotechnique, 63, 487–499.Search in Google Scholar

Fournelle, J. (2011) An investigation of “San Carlos Olivine”: Comparing USNM-distributed material with commercially available material. Microscopy and Microanalysis, 17, 842–843.Search in Google Scholar

Gall, L., Williams, H.M., Halliday, A.N., and Kerr, A.C. (2017) Nickel isotopic composition of the mantle. Geochimica et Cosmochimica Acta, 199, 196–209.Search in Google Scholar

Gibb, F.G.F., and Henderson, C.M.B. (1992) Convection and crystal settling in sills. Contributions to Mineralogy and Petrology, 109, 538–545.Search in Google Scholar

Hall, S., Bornert, M., Desrues, J., Pannier, Y., Lenoir, N., Viggiani, G., and Bésuelle, P. (2010) Discrete and continuum analysis of localised deformation in sand using X‑ray μCT and volumetric digital image correlation. Géotechnique, 60, 315–322.Search in Google Scholar

Hartley, M.E., Morgan, D.J., Maclennan, J., Edmonds, M., and Thordarson, T. (2016) Tracking timescales of short-term precursors to large basaltic fissure eruptions via Fe–Mg diffusion in olivine. EPSL, 439, 58–70.Search in Google Scholar

Harvey, J., Yoshikawa, M., Hammond, S.J., and Burton, K.W. (2012) Deciphering the trace element characteristics in Kilbourne Hole peridotite xenoliths: melt–rock interaction and metasomatism beneath the Rio Grande Rift, SW USA. Journal of Petrology, 53, 1709–1742.Search in Google Scholar

Harvey, J., König, S., and Luguet, A. (2015) The effects of melt depletion and metasomatism on highly siderophile and strongly chalcophile elements: S-Se-Te-Re-PGE systematics of peridotite xenoliths from Kilbourne Hole, New Mexico: Geochimica et Cosmochimica Acta, 166, 210–233.Search in Google Scholar

Holness, M.B., Farr, R., and Neufeld, J. A. (2017) Crystal settling and convection in the Shiant Isles Main Sill. Contributions to Mineralogy and Petrology, 172, 7.Search in Google Scholar

Holtzman, B., Kohlstedt, D., Zimmerman, M., Heidelbach, F., Hiraga, T., and Hustoft, J. (2003) Melt segregation and strain partitioning: implications for seismic anisotropy and mantle flow. Science, 301, 1227–1230.Search in Google Scholar

Huang, F., Zhang, Z., Lundstrom, C.C., and Zhi, X. (2011) Iron and magnesium isotopic compositions of peridotite xenoliths from Eastern China. Geochimica et Cosmochimica Acta, 75, 3318–3334.Search in Google Scholar

Jahanbagloo, I. (1969) X‑ray diffraction study of olivine solid solution series. American Mineralogist, 54, p. 246-+.Search in Google Scholar

Jarosewich, E., Nelen, J.A., and Norberg, J.A. (1980) Reference Samples for Electron Microprobe Analysis. Geostandards Newsletter, 4, 43–47.Search in Google Scholar

Jerram, D.A., Mock, A., Davis, G.R., Field, M., and Brown, R.J. (2009) 3D crystal size distributions: A case study on quantifying olivine populations in kimberlites. Lithos, 112, 223–235.Search in Google Scholar

Jerram, D.A., Dobson, K.J., Morgan, D.J., and Pankhurst, M.J. (2018) The petrogenesis of magmatic systems: Using igneous textures to understand magmatic processes. In Burchardt, S., Ed., Volcanic and Igneous Plumbing Systems, p. 191–229. Elsevier.Search in Google Scholar

Kahl, M., Chakraborty, S., Costa, F., and Pompilio, M. (2011) Dynamic plumbing system beneath volcanoes revealed by kinetic modeling, and the connection to monitoring data. An example from Mt. Etna. Earth and Planetary Science Letters, 308, 11–22.Search in Google Scholar

Kahl, M., Chakraborty, S., Costa, F., Pompilio, M., Liuzzo, M., and Viccaro, M. (2013) Compositionally zoned crystals and real-time degassing data reveal changes in magma transfer dynamics during the 2006 summit eruptive episodes of Mt. Etna. Bulletin of Volcanology, 75, 1–14.Search in Google Scholar

Ketcham, R.A. (2005) Computational methods for quantitative analysis of three-dimensional features in geological specimens. Geosphere, 1, 32–41.Search in Google Scholar

Ketcham, R.A., and Carlson, W.D. (2001) Acquisition, optimization and interpretation of X‑ray computed tomographic imagery: applications to the geosciences. Computers & Geosciences, 27, 381–400.Search in Google Scholar

Kile, D.E. (2009) The universal stage: The past, present, and future of a mineralogical research instrument. Geochemical News, 140(8).Search in Google Scholar

Leber, A.W., Knez, A., Becker, A., Becker, C., von Ziegler, F., Nikolaou, K., Rist, C., Reiser, M., White, C., Steinbeck, G., and Boekstegers, P. (2004) Accuracy of multidetector spiral computed tomography in identifying and differentiating the composition of coronary atherosclerotic plaques. A comparative study with intracoronary ultrasound. Journal of the American College of Cardiology, 43, 1241–1247.Search in Google Scholar

Lemelle, L., Simionovici, A., Truche, R., Rau, C., Chukalina, M., and Gillet, P. (2004) A new nondestructive X‑ray method for the determination of the 3D mineralogy at the micrometer scale. American Mineralogist, 89, 547–553.Search in Google Scholar

Lin, M. (2007) CrossHair v1.1. https://www.mlin.net/CrossHair.shtmlSearch in Google Scholar

Lin, Q., Neethling, S., Courtois, L., Dobson, K., and Lee, P. (2016) Multi-scale quantification of leaching performance using X‑ray tomography. Hydrometallurgy, 164, 265–277.Search in Google Scholar

Liu, X., Yu, L., Primak, A.N., and McCollough, C.H. (2009) Quantitative imaging of element composition and mass fraction using dual-energy CT. Three-material decomposition. Medical Physics, 36, 1602–1609.Search in Google Scholar

Ma, L., Taylor, K.G., Lee, P.D., Dobson, K.J., Dowey, P.J., and Courtois, L. (2016) Novel 3D centimetre-to nano-scale quantification of an organic-rich mudstone: The Carboniferous Bowland Shale, Northern England. Marine and Petroleum Geology, 72, 193–205.Search in Google Scholar

Macente, A., Fusseis, F., Menegon, L., Xianghui, X., and John, T. (2017) The strain-dependent spatial evolution of garnet in a high-pressure ductile shear zone from the Western Gneiss Region (Norway): a synchrotron X‑ray microtomography study. Journal of Metamorphic Geology, 35(5), 565–583.Search in Google Scholar

Marteau, J., Gibert, D., Lesparre, N., Nicollin, F., Noli, P., and Giacoppo, F. (2012) Muons tomography applied to geosciences and volcanology. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 695, 23–28.Search in Google Scholar

McDonald, S., Reischig, P., Holzner, C., Lauridsen, E., Withers, P., Merkle, A., and Feser, M. (2015) Non-destructive mapping of grain orientations in 3D by laboratory X‑ray microscopy. Scientific Reports, 5, 14665.Search in Google Scholar

Mizukami, T., Wallis, S.R., and Yamamoto, J. (2004) Natural examples of olivine lattice preferred orientation patterns with a flow-normal a-axis maximum. Nature, 427, 432.Search in Google Scholar

Mock, A., and Jerram, D.A. (2005) Crystal Size Distributions (CSD) in three dimensions: Insights from the 3D reconstruction of a highly porphyritic rhyolite. Journal of Petrology, 46, 1525–1541.Search in Google Scholar

Morgan, D.J., and Jerram, D.A. (2006) On estimating crystal shape for crystal size distribution analysis. Journal of Volcanology and Geothermal Research, 154, 1–7.Search in Google Scholar

Nakashima, Y. (2000) The use of X‑ray CT to measure diffusion coefficients of heavy ions in water-saturated porous media. Engineering Geology, 56, 11–17.Search in Google Scholar

Pankhurst, M.J., Dobson, K.J., Morgan, D.J., Loughlin, S.C., Thordarson, T., Courtios, L., and Lee, P.D. (2014) Directly monitoring the magmas fuelling volcanic eruptions in near-real-time using X‑ray micro-computed tomography. Journal of Petrology, 55, 671–684.Search in Google Scholar

Pankhurst, M.J., Walshaw, R., and Morgan, D.J. (2017) Major element chemical heterogeneity in Geo2 olivine microbeam reference material: A spatial approach to quantifying heterogeneity in primary reference materials. Geostandards and Geoanalytical Research, 41, 85–91.Search in Google Scholar

Pankhurst, M.J., Morgan, D.J., Thordarson, T., and Loughlin, S.C. (2018a) Magmatic crystal records in time, space, and process, causatively linked with volcanic unrest. Earth and Planetary Science Letters, 493, 231–241.Search in Google Scholar

Pankhurst, M.J., Fowler, R., Courtois, L., Nonni, S., Zuddas, F., Atwood, R.C., Davis, G.R., and Lee, P.D. (2018b) Enabling three-dimensional densitometric measurements using laboratory source X‑ray micro-computed tomography. SoftwareX, 7, 115–121.Search in Google Scholar

Philpotts, A.R., Brustman, C.M., Shi, J., Carlson, W.D., and Denison, C. (1999) Plagioclase-chain networks in slowly cooled basaltic magma. American Mineralogist, 84, 1819–1829.Search in Google Scholar

Pistone, M., Caricchi, L., Fife, J. L., Mader, K., and Ulmer, P. (2015) In situ X‑ray tomographic microscopy observations of vesiculation of bubble-free and bubble-bearing magmas. Bulletin of Volcanology, 77, 108.Search in Google Scholar

Poldervaart, A. (1950) Correlation of physical properties and chemical composition in the plagioclase, olivine, and orthopyroxene series. American Mineralogist, 35, 1067–1079.Search in Google Scholar

Ramachandran, G., and Lakshminarayanan, A. (1971) Three-dimensional reconstruction from radiographs and electron micrographs: application of convolutions instead of Fourier transforms. Proceedings of the National Academy of Sciences, 68, 2236–2240.Search in Google Scholar

Rasband, W.S. (2015) Image J. U.S. National Institutes of Health, Bethesda, Maryland.Search in Google Scholar

Reyes, F., Lin, Q., Udoudo, O., Dodds, C., Lee, P., and Neethling, S. (2017) Calibrated X‑ray micro-tomography for mineral ore quantification. Minerals Engineering, 110, 122–130.Search in Google Scholar

Reyes-Dávila, G.A., Arámbula-Mendoza, R., Espinasa-Pereña, R., Pankhurst, M.J., Navarro-Ochoa, C., Savov, I., Vargas-Bracamontes, D.M., Cortés-Cortés, A., Gutiérrez-Martínez, C., Valdés-González, C., and others. (2016) Volcán de Colima dome collapse of July, 2015 and associated pyroclastic density currents. Journal of Volcanology and Geothermal Research, 320, 100–106.Search in Google Scholar

Rivers, M. (1998) Tutorial introduction to X‑ray computed microtomography data processing. University of Chicago. Search in Google Scholar

Rudraswami, N., Prasad, M.S., Jones, R., and Nagashima, K. (2016) In situ oxygen isotope compositions in olivines of different types of cosmic spherules: An assessment of relationships to chondritic particles. Geochimica et Cosmochimica Acta, 194, 1–14.Search in Google Scholar

Shea, T., Costa, F., Krimer, D., and Hammer, J.E. (2015) Accuracy of timescales retrieved from diffusion modeling in olivine: A 3D perspective. American Mineralogist, 100, 2026–2042.Search in Google Scholar

Sigmundsson, F., Hreinsdóttir, S., Hooper, A., Árnadóttir, T., Pedersen, R., Roberts, M.J., Óskarsson, N., Auriac, A., Decriem, J., Einarsson, P., and others. (2010) Intrusion triggering of the 2010 Eyjafjallajökull explosive eruption. Nature, 468, 426–432.Search in Google Scholar

Sio, C.K.I., Dauphas, N., Teng, F.-Z., Chaussidon, M., Helz, R.T., and Roskosz, M. (2013) Discerning crystal growth from diffusion profiles in zoned olivine by in situ Mg–Fe isotopic analyses. Geochimica et Cosmochimica Acta, 123, 302–321.Search in Google Scholar

Sorby, H.C. (1858) On the microscopical, structure of crystals, indicating the origin of minerals and rocks. Quarterly Journal of the Geological Society, 14, 453–500.Search in Google Scholar

Sparks, S.R.J., Sigurdsson, H., and Wilson, L. (1977) Magma mixing: a mechanism for triggering acid explosive eruptions. Nature, 267, 315–318.Search in Google Scholar

Suuronen, J.-P., and Sayab, M. (2018) 3D nanopetrography and chemical imaging of datable zircons by synchrotron multimodal X‑ray tomography. Scientific Reports, 8, 4747.Search in Google Scholar

Thomson, A., and Maclennan, J. (2013) The distribution of olivine compositions in Icelandic basalts and picrites. Journal of Petrology, 54, 745–768.Search in Google Scholar

Vinet, N., and Higgins, M.D. (2011) What can crystal size distributions and olivine compositions tell us about magma solidification processes inside Kilauea Iki lava lake, Hawaii? Journal of Volcanology and Geothermal Research, 208, 136–162.Search in Google Scholar

Vo, N.T., Atwood, R.C., and Drakopoulos, M. (2018) Superior techniques for eliminating ring artifacts in X-ray micro-tomography. Optics Express, in press.Search in Google Scholar

Vo, N.T., Drakopoulos, M., Atwood, R.C., and Reinhard, C. (2014) Reliable method for calculating the center of rotation in parallel-beam tomography. Optics Express, 22, 19,078–19,086.Search in Google Scholar

Wang, H., Kashyap, Y., and Sawhney, K. (2016a) From synchrotron radiation to lab source: advanced speckle-based X‑ray imaging using abrasive paper. Scientific Reports, 6, article no. 20476, 9 pages.Search in Google Scholar

Wang, H., Kashyap, Y., and Sawhney, K. (2016b) Quantitative X‑ray dark-field and phase tomography using single directional speckle scanning technique. Applied Physics Letters, 108, 124102.Search in Google Scholar

Wang, H., Cai, B., Pankhurst, M.J., Zhou, T., Kashyap, Y., Atwood, R., Le Gall, N., Lee, P., Drakopoulos, M., and Sawhney, K. (2018) X‑ray phase-contrast imaging with engineered porous materials over 50 keV. Journal of Synchrotron Radiation, 25, 1182–1188.Search in Google Scholar

Whitney, D.L., and Evans, B.W. (2010) Abbreviations for names of rock-forming minerals. American Mineralogist, 95, 185–187.Search in Google Scholar

Winkler, B., Knorr, K., Kahle, A., Vontobel, P., Lehmann, E., Hennion, B., and Bayon, G. (2002) Neutron imaging and neutron tomography as non-destructive tools to study bulk-rock samples. European Journal of Mineralogy, 14, 349–354.Search in Google Scholar

Yue, S., Lee, P.D., Poologasundarampillai, G., and Jones, J.R. (2011) Evaluation of 3-D bioactive glass scaffolds dissolution in a perfusion flow system with X‑ray microtomography. Acta Biomaterialia, 7, 2637–2643.Search in Google Scholar

Received: 2017-12-01
Accepted: 2018-07-16
Published Online: 2018-10-30
Published in Print: 2018-11-27

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