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Biological Chemistry

Editor-in-Chief: Brüne, Bernhard

Editorial Board: Buchner, Johannes / Lei, Ming / Ludwig, Stephan / Sies, Helmut / Thomas, Douglas D. / Turk, Boris / Wittinghofer, Alfred


IMPACT FACTOR 2017: 3.022

CiteScore 2017: 2.81

SCImago Journal Rank (SJR) 2017: 1.562
Source Normalized Impact per Paper (SNIP) 2017: 0.705

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1437-4315
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Volume 393, Issue 11

Issues

The GlycanBuilder and GlycoWorkbench glycoinformatics tools: updates and new developments

David Damerell
  • Division of Molecular Biosciences, School of Life Sciences, Imperial College London, London SW7 2AZ, UK
  • Other articles by this author:
  • De Gruyter OnlineGoogle Scholar
/ Alessio Ceroni / Kai Maass
  • Institute for Inorganic and Analytical Chemistry, Justus-Liebig-University Giessen, 35392 Giessen, Germany
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  • De Gruyter OnlineGoogle Scholar
/ Rene Ranzinger / Anne Dell
  • Division of Molecular Biosciences, School of Life Sciences, Imperial College London, London SW7 2AZ, UK
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/ Stuart M. Haslam
  • Corresponding author
  • Division of Molecular Biosciences, School of Life Sciences, Imperial College London, London SW7 2AZ, UK
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Published Online: 2012-10-11 | DOI: https://doi.org/10.1515/hsz-2012-0135

Abstract

During the EUROCarbDB project our group developed the GlycanBuilder and GlycoWorkbench glycoinformatics tools. This short communication summarizes the capabilities of these two tools and updates which have been made since the original publications in 2007 and 2008. GlycanBuilder is a tool that allows for the fast and intuitive drawing of glycan structures; this tool can be used standalone, embedded in web pages and can also be integrated into other programs. GlycoWorkbench has been designed to semi-automatically annotate glycomics data. This tool can be used to annotate mass spectrometry (MS) and MS/MS spectra of free oligosaccharides, N and O-linked glycans, GAGs (glycosaminoglycans) and glycolipids, as well as MS spectra of glycoproteins.

Keywords: BioInformatics; carbohydrate; glycan; glycomics; glycoproteomics; mass spectrometry

About the article

Corresponding author: Stuart M. Haslam, Division of Molecular Biosciences, School of Life Sciences, Imperial College London, London SW7 2AZ, UK


Received: 2012-02-28

Accepted: 2012-07-16

Published Online: 2012-10-11

Published in Print: 2012-11-01


Citation Information: , Volume 393, Issue 11, Pages 1357–1362, ISSN (Online) 1437-4315, ISSN (Print) 1431-6730, DOI: https://doi.org/10.1515/hsz-2012-0135.

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