Jump to ContentJump to Main Navigation
Show Summary Details
More options …

Biologia

12 Issues per year


IMPACT FACTOR 2016: 0.759
5-year IMPACT FACTOR: 0.803

CiteScore 2017: 0.86

SCImago Journal Rank (SJR) 2017: 0.299
Source Normalized Impact per Paper (SNIP) 2017: 0.544

Online
ISSN
1336-9563
See all formats and pricing
More options …
Volume 63, Issue 4

Issues

Tetraploids Isatis indigotica are more responsive and adaptable to stresses than the diploid progenitor based on changes in expression patterns of a cold inducible Ii CPK1

Xinzhu Pan
  • State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, Fudan University, Shanghai, 200433, Peoples Republic of China
  • Email
  • Other articles by this author:
  • De Gruyter OnlineGoogle Scholar
/ Ying Xiao
  • Department of Pharmacognosy, School of Pharmacy, Second Military Medical University, Shanghai, 200433, Peoples Republic of China
  • Email
  • Other articles by this author:
  • De Gruyter OnlineGoogle Scholar
/ Zinan Wang
  • State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, Fudan University, Shanghai, 200433, Peoples Republic of China
  • Email
  • Other articles by this author:
  • De Gruyter OnlineGoogle Scholar
/ Lei Zhang
  • Department of Pharmacognosy, School of Pharmacy, Second Military Medical University, Shanghai, 200433, Peoples Republic of China
  • Email
  • Other articles by this author:
  • De Gruyter OnlineGoogle Scholar
/ Kexuan Tang
  • State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, Fudan University, Shanghai, 200433, Peoples Republic of China
  • Plant Biotechnology Research Center, School of Agriculture and Biology, Fadan-SJTU-Nottingham Plant Biotechnology R&D Center, Shanghai Jiao Tong University, Shanghai, 200240, Peoples Republic of China
  • Email
  • Other articles by this author:
  • De Gruyter OnlineGoogle Scholar
Published Online: 2008-06-21 | DOI: https://doi.org/10.2478/s11756-008-0094-z

Abstract

In plants, Ca2+-dependent protein kinases (CDPKs) are characterized as important sensors of Ca2+ flux in response to varieties of biotic and abiotic stress. A comprehensive survey of global gene expression performed by using an Arabidopsis thaliana whole genome Affymetrix gene chip revealed that CDPK tends to be significantly higher in tetraploid Isatis indigotica than in diploid ones. To investigate different CDPK expression in response to polyploidy, a full-length cDNA clone (IiCPK1) encoding CDPK was isolated from the traditional Chinese medicinal herb I. indigotica cDNA library. IiCPK1 contains some basic features of CDPKs: a catalytic kinase domain including an ATP-binding domain and four EFhand calcium-binding motifs. Real-time PCR analysis indicated the expression of IiCPK1 from two kinds of I. indigotica (tetraploid and diploid). They both were induced in response to cold stress, but tetraploids I. indigotica which has good fertility, exhibited an enhanced resistance and higher yield, and presented to be more responsive and adaptable. Our results suggest that IiCPK1 gene plays a role in adapting to the environmental stress.

Keywords: IiCPK1; Isatis indigotica; cold stress; RACE; Real-time PCR

  • [1] Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W. & Lipman D.J. 1997. Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389–3402. http://dx.doi.org/10.1093/nar/25.17.3389CrossrefGoogle Scholar

  • [2] Benson D.A., Karsch-Mizrachi I., Lipman D.J., Ostell J. & Wheeler D.L. 2007. GenBank. Nucleic Acids Res. 35 (Database issue): D21–D25. http://dx.doi.org/10.1093/nar/gkl986CrossrefGoogle Scholar

  • [3] Gasteiger E., Gattiker A., Hoogland C., Ivanyi I., Appel R.D. & Bairoch A. 2003. ExPASy: the proteomics server for indepth protein knowledge and analysis. Nucleic Acids Res 31: 3784–3788. Harmon A.C., Gribskov M. & Harper J.F. 2000. CDPKs — a kinase for every Ca2+ signal? Trends Plant Sci. 5: 154–159. http://dx.doi.org/10.1093/nar/gkg563CrossrefGoogle Scholar

  • [4] Harper J.F., Bimder B.M. & Sussman M.R. 1993. Calcium and lipid regulation of an A. thaliana protein kinase expressed in Escherichia coli. Biochemistry 32: 3282–3290. http://dx.doi.org/10.1021/bi00064a010CrossrefGoogle Scholar

  • [5] Harper J.F., Sussman M.R., Schaller G.E., Putnam-Evans C., Charbonneau H. & Harman A.C. 1991. A calcium-dependent protein kinase with a regulatory domain similar to calmodulin. Science 252: 951–954. http://dx.doi.org/10.1126/science.1852075CrossrefGoogle Scholar

  • [6] Hrabak E.M., Chan C.W., Gribskov M., Harper J.F., Choi J.H., Halford N., Kudla J., Luan S., Nimmo H.G., Sussman M.R., Thomas M., Walker-Simmons K., Zhu J.K., Harmon A.C. 2003. The Arabidopsis CDPK-SnRK superfamily of protein kinases. Plant Physiol. 132: 666–680. http://dx.doi.org/10.1104/pp.102.011999CrossrefGoogle Scholar

  • [7] Jaakola L., Pirtila A.M., Halonen M. & Hohtola A. 2001. Isolation of high quality RNA from bilberry (Vaccinium myrtillus L.) fruit. Mol. Biotechnol. 19: 201–203. http://dx.doi.org/10.1385/MB:19:2:201CrossrefGoogle Scholar

  • [8] Kashkush K., Feldman M. & Levy A.A. 2003. Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat. Genet. 33: 102–106. http://dx.doi.org/10.1038/ng1063CrossrefGoogle Scholar

  • [9] Kumar S., Tamura K. & Nei M. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5: 150–163. http://dx.doi.org/10.1093/bib/5.2.150CrossrefGoogle Scholar

  • [10] Lee H.S. & Chen Z.J. 2001. Protein-coding genes are epigenetically regulated in Arabidopsis polyploids. Proc. Natl. Acad. Sci. USA 98: 6753–6758. http://dx.doi.org/10.1073/pnas.121064698CrossrefGoogle Scholar

  • [11] Llop-Tous I., Dominguez-Puigjaner E. & Vendrell M. 2002. Characterization of a strawberry cDNA clone homologous to calcium-dependent protein kinases that is expressed during fruit ripening and affected by low temperature. J. Exp. Bot. 53: 2283–2285. http://dx.doi.org/10.1093/jxb/erf103CrossrefGoogle Scholar

  • [12] Lu B.B., Pan X.Z., Zhang L., Huang B.B., Sun L.N., Li B., Yi B., Zheng S.Q., Yu X.J., Ding R.X. & Chen W.S. 2006. Genes responsive to autopolyploidy in Isatis indigotica using Arabidopsis thaliana affymetrix genechips. Plant Mol. Biol. Rep. 24: 197–204. http://dx.doi.org/10.1007/BF02914058CrossrefGoogle Scholar

  • [13] Qiao C.Z. & Li H. 1994. Cultivation and popularization for tetraploidy strain of Isatis indigotica. Chinese Traditional Herb 17: 3–6. Google Scholar

  • [14] Qiao C.Z., Wu M.S., Dai F.B., Cui X. & Li L. 1989. Studies on polyploid breeding of Isatis indigotica Fort. Acta Botanica Sinica 31: 678–683. Google Scholar

  • [15] Romeis T., Ludwig A., Martin R. & Jones J. 2001. Calciumdependent protein kinases play an essential role in a plant defence response. EMBO J. 20: 5556–5567. http://dx.doi.org/10.1093/emboj/20.20.5556CrossrefGoogle Scholar

  • [16] Rudd J.J. & Franklin-Tong V.E. 2001. Unravelling response-specificity in Ca2+ signaling pathways in plant cells. New Phytol. 151: 7–33. http://dx.doi.org/10.1046/j.1469-8137.2001.00173.xCrossrefGoogle Scholar

  • [17] Saijo Y., Hata S., Sheen J. & Izui K. 1997. cDNA cloning and prokaryotic expression of maize calcium-dependent protein kinases. Biochim. Biophys. Acta 1350: 109–114. Google Scholar

  • [18] Schranz M.E. & Osborn T.C. 2000. Novel flowering time and variation in the resynthesized polyploid Brassica napus. J. Heredity 91: 242–246. http://dx.doi.org/10.1093/jhered/91.3.242CrossrefGoogle Scholar

  • [19] Siow Y.L., Gong Y., Au-Yeung K.K., Woo C.W. & Choy P.C. 2005. Emerging issues in traditional Chinese medicine. Can. J. Physiol. Pharmacol. 82: 321–334. http://dx.doi.org/10.1139/y05-029CrossrefGoogle Scholar

  • [20] The Arabidopsis Initiative 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796–815. http://dx.doi.org/10.1038/35048692CrossrefGoogle Scholar

  • [21] Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F. & Higgins D.G. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876–4882. http://dx.doi.org/10.1093/nar/25.24.4876CrossrefGoogle Scholar

  • [22] Urao T., Katagiri T., Mizoguchi T., Yamaguchi-Shinozaki K., Hayashida N. & Shinozaki K. 1994. An Arabidopsis thaliana cDNA encoding Ca2+-dependent protein kinase. Plant Physiol. 105: 1461–1462. http://dx.doi.org/10.1104/pp.105.4.1461Google Scholar

  • [23] Wang Y., Qiao C.Z., Liu S. & Hang H.M. 2000. Evaluation on antiendotoxic action and antiviral action in vitro of tetraploid Isatis indigotica. Chinese Traditional Herb 25: 327–329. Google Scholar

  • [24] Wu Y.C., Hsu J.H., Liu I.M., Liou S.S., Su H.C. & Cheng J.T. 2002. Increase of insulin sensitivity in diabetic rats received Die-Huang-Wan, a herbal mixture used in Chinese traditional medicine. Acta Pharmacologica Sinica 23: 1181–1187. Google Scholar

  • [25] Xie C., Kokubun T., Houghton P.J. & Simmonds M.S. 2004. Antibacterial activity of the Chinese traditional medicine, Zi Hua Di Ding. Phytother. Res. 18: 497–500. http://dx.doi.org/10.1002/ptr.1497CrossrefGoogle Scholar

  • [26] Yoon G.M., Cho H.S., Ha H.J., Liu J.R. & Lee H.S.P. 1999. Characterization of NtCDPK1, a calcium-dependent protein kinase gene in Nicotiana tabacum, and the activity of its encoded protein. Plant Mol. Biol. 39: 991–1001. http://dx.doi.org/10.1023/A:1006170512542CrossrefGoogle Scholar

  • [27] Zhang B., Wang Z.F., Tang M.Z. & Shi Y.L. 2005. Growth inhibition and apoptosis-induced effect on human cancer cells of toosendanin, a triterpenoid derivative from Chinese traditional medicine. Invest. New Drugs 23: 547–553. http://dx.doi.org/10.1007/s10637-005-0909-5CrossrefGoogle Scholar

About the article

Published Online: 2008-06-21

Published in Print: 2008-08-01


Citation Information: Biologia, Volume 63, Issue 4, Pages 535–541, ISSN (Online) 1336-9563, ISSN (Print) 0006-3088, DOI: https://doi.org/10.2478/s11756-008-0094-z.

Export Citation

© 2008 Slovak Academy of Sciences. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License. BY-NC-ND 3.0

Citing Articles

Here you can find all Crossref-listed publications in which this article is cited. If you would like to receive automatic email messages as soon as this article is cited in other publications, simply activate the “Citation Alert” on the top of this page.

[1]
Hirokazu Tsukaya, Yuji Sawada, Akira Oikawa, Katsuhiro Shiratake, Kanji Isuzugawa, Kazuki Saito, and Masami Yokota Hirai
New Negatives in Plant Science, 2015, Volume 1-2, Page 53

Comments (0)

Please log in or register to comment.
Log in