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Cellular and Molecular Biology Letters

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1689-1392
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Volume 12, Issue 1 (Mar 2007)

Genetic diversity of SIRE-1 retroelements in annual and perennial glycine species revealed using SSAP

Catherine Chesnay
  • Scottish Crop Research Institute, Invergowrie, Dundee, DD2 5DA, UK
  • Email:
/ Amar Kumar
  • Scottish Crop Research Institute, Invergowrie, Dundee, DD2 5DA, UK
  • Email:
/ Stephen Pearce
  • School of Life-Sciences, University of Sussex, Brighton, BN1 9QG, UK
  • Email:
Published Online: 2006-11-13 | DOI: https://doi.org/10.2478/s11658-006-0054-y

Abstract

Sequence Specific Amplification Polymorphisms (SSAP) were used to measure the distribution and structure of SIRE-1 retroelement populations in annual and perennial Glycine species. For SSAP analysis, primers corresponding to a region immediately upstream of the 3’LTR of the soybean retroelement SIRE-1 were chosen. Analysis reveals that SIRE-1 is present throughout the Glycine genus and shows that the annual species have similar SIRE-1 populations whilst the perennial species have much more distinct and diverse populations. The high number of species-specific subgroups suggest that SIRE-1 has been active and evolving independently in each species during the course of Glycine evolution.

Keywords: Glycine; Retroelement; SSAP; phylogeny; SIRE-1; copia

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About the article

Published Online: 2006-11-13

Published in Print: 2007-03-01


Citation Information: Cellular and Molecular Biology Letters, ISSN (Online) 1689-1392, DOI: https://doi.org/10.2478/s11658-006-0054-y. Export Citation

© 2006 University of Wrocław, Poland. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License. (CC BY-NC-ND 3.0)

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