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Journal of Integrative Bioinformatics

Editor-in-Chief: Schreiber, Falk / Hofestädt, Ralf

Managing Editor: Sommer, Björn

Ed. by Baumbach, Jan / Chen, Ming / Orlov, Yuriy / Allmer, Jens

Editorial Board: Giorgetti, Alejandro / Harrison, Andrew / Kochetov, Aleksey / Krüger, Jens / Ma, Qi / Matsuno, Hiroshi / Mitra, Chanchal K. / Pauling, Josch K. / Rawlings, Chris / Fdez-Riverola, Florentino / Romano, Paolo / Röttger, Richard / Shoshi, Alban / Soares, Siomar de Castro / Taubert, Jan / Tauch, Andreas / Yousef, Malik / Weise, Stephan / Hassani-Pak, Keywan


CiteScore 2018: 0.90

SCImago Journal Rank (SJR) 2018: 0.315

Open Access
Online
ISSN
1613-4516
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Volume 7, Issue 1

Issues

PathJam: a new service for integrating biological pathway information

Daniel Glez-Peña
  • Escuela Superior de Ingeniería Informática University of Vigo, Edificio Politécnico, Campus Universitario As Lagoas s/n, 32004 Ourense, Spain
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/ Miguel Reboiro-Jato
  • Escuela Superior de Ingeniería Informática University of Vigo, Edificio Politécnico, Campus Universitario As Lagoas s/n, 32004 Ourense, Spain
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/ Rubén Domínguez / Gonzalo Gómez-López
  • Unidad de Bioinformática (UBio), Programa de Biología Estructural y Biocomputación, Centro Nacional de Investigaciones Oncológicas (CNIO), C/ Melchor Fernández Almagro 3, 28029, Madrid, Spain
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/ David G. Pisano
  • Unidad de Bioinformática (UBio), Programa de Biología Estructural y Biocomputación, Centro Nacional de Investigaciones Oncológicas (CNIO), C/ Melchor Fernández Almagro 3, 28029, Madrid, Spain
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/ Florentino Fdez-Riverola
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  • Escuela Superior de Ingeniería Informática University of Vigo, Edificio Politécnico, Campus Universitario As Lagoas s/n, 32004 Ourense, Spain
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Published Online: 2016-10-18 | DOI: https://doi.org/10.1515/jib-2010-147

Summary

Biological pathways are crucial to much of the scientific research today including the study of specific biological processes related with human diseases. PathJam is a new comprehensive and freely accessible web-server application integrating scattered human pathway annotation from several public sources. The tool has been designed for both (i) being intuitive for wet-lab users providing statistical enrichment analysis of pathway annotations and (ii) giving support to the development of new integrative pathway applications. PathJam’s unique features and advantages include interactive graphs linking pathways and genes of interest, downloadable results in fully compatible formats, GSEA compatible output files and a standardized RESTful API.

About the article

Published Online: 2016-10-18

Published in Print: 2010-03-01


Citation Information: Journal of Integrative Bioinformatics, Volume 7, Issue 1, Pages 97–113, ISSN (Online) 1613-4516, DOI: https://doi.org/10.1515/jib-2010-147.

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© 2010 The Author(s). Published by Journal of Integrative Bioinformatics.. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License. BY-NC-ND 4.0

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[1]
Brian W. Kunkle, Changwon Yoo, Deodutta Roy, and Kamaleshwar Singh
PLoS ONE, 2013, Volume 8, Number 5, Page e64140
[2]
Daniel Glez-Peña, Anália Lourenço, Hugo López-Fernández, Miguel Reboiro-Jato, and Florentino Fdez-Riverola
Briefings in Bioinformatics, 2014, Volume 15, Number 5, Page 788

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