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Journal of Integrative Bioinformatics

Editor-in-Chief: Schreiber, Falk / Hofestädt, Ralf

Managing Editor: Sommer, Björn

Ed. by Baumbach, Jan / Chen, Ming / Orlov, Yuriy / Allmer, Jens

Editorial Board: Giorgetti, Alejandro / Harrison, Andrew / Kochetov, Aleksey / Krüger, Jens / Ma, Qi / Matsuno, Hiroshi / Mitra, Chanchal K. / Pauling, Josch K. / Rawlings, Chris / Fdez-Riverola, Florentino / Romano, Paolo / Röttger, Richard / Shoshi, Alban / Soares, Siomar de Castro / Taubert, Jan / Tauch, Andreas / Yousef, Malik / Weise, Stephan / Hassani-Pak, Keywan


CiteScore 2017: 0.77

SCImago Journal Rank (SJR) 2017: 0.336

Open Access
Online
ISSN
1613-4516
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Volume 8, Issue 2

Issues

MADMAX – Management and analysis database for multiple ~omics experiments

Ke Lin
  • Laboratory of Bioinformatics, P.O. Box 569, 6700 AN Wageningen, Netherlands Netherlands
  • Laboratory of Plant Breeding, P.O. Box 386, 6700 AJ Wageningen, Netherlands
  • Other articles by this author:
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/ Harrie Kools / Philip J. de Groot / Anand K. Gavai
  • Laboratory of Bioinformatics, P.O. Box 569, 6700 AN Wageningen, the Netherlands Netherlands
  • Netherlands Bioinformatics Centre (NBIC), P.O. Box 9101, 6500 HB Nijmegen, Netherlands
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/ Ram K. Basnet / Feng Cheng
  • Institute of Vegetable and Flowers, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing, 100081, China
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/ Jian Wu
  • Institute of Vegetable and Flowers, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing, 100081, China
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  • De Gruyter OnlineGoogle Scholar
/ Xiaowu Wang
  • Institute of Vegetable and Flowers, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing, 100081, China
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/ Arjen Lommen / Guido J. E. J. Hooiveld / Guusje Bonnema / Richard G. F. Visser / Michael R. Muller / Jack A. M. Leunissen
  • Corresponding author
  • Laboratory of Bioinformatics, P.O. Box 569, 6700 AN Wageningen, the Netherlands Netherlands
  • Netherlands Bioinformatics Centre (NBIC), P.O. Box 9101, 6500 HB Nijmegen, Netherlands
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Published Online: 2016-10-18 | DOI: https://doi.org/10.1515/jib-2011-160

Summary

The rapid increase of ~omics datasets generated by microarray, mass spectrometry and next generation sequencing technologies requires an integrated platform that can combine results from different ~omics datasets to provide novel insights in the understanding of biological systems. MADMAX is designed to provide a solution for storage and analysis of complex ~omics datasets. In addition, analysis results (such as lists of genes) can be merged to reveal candidate genes supported by all datasets. The system constitutes an ISA-Tab compliant LIMS part, which is linked to the different analysis pipelines. A pilot study of different type of ~omics data in Brassica rapa demonstrates the possible use of MADMAX. The web-based user interface provides easy access to data and analysis tools on top of the database.

About the article

Published Online: 2016-10-18

Published in Print: 2011-06-01


Citation Information: Journal of Integrative Bioinformatics, Volume 8, Issue 2, Pages 59–74, ISSN (Online) 1613-4516, DOI: https://doi.org/10.1515/jib-2011-160.

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© 2011 The Author(s). Published by Journal of Integrative Bioinformatics.. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License. BY-NC-ND 4.0

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