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Journal of Integrative Bioinformatics

Editor-in-Chief: Schreiber, Falk / Hofestädt, Ralf

Managing Editor: Sommer, Björn

Ed. by Baumbach, Jan / Chen, Ming / Orlov, Yuriy / Allmer, Jens

Editorial Board: Giorgetti, Alejandro / Harrison, Andrew / Kochetov, Aleksey / Krüger, Jens / Ma, Qi / Matsuno, Hiroshi / Mitra, Chanchal K. / Pauling, Josch K. / Rawlings, Chris / Fdez-Riverola, Florentino / Romano, Paolo / Röttger, Richard / Shoshi, Alban / Soares, Siomar de Castro / Taubert, Jan / Tauch, Andreas / Yousef, Malik / Weise, Stephan / Hassani-Pak, Keywan


CiteScore 2017: 0.77

SCImago Journal Rank (SJR) 2017: 0.336

Open Access
Online
ISSN
1613-4516
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Volume 8, Issue 2

Issues

Bio-Search Computing: Integration and global ranking of bioinformatics search results

Marco Masseroli
  • Corresponding author
  • Dipartimento di Elettronica e Informazione, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy
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  • Other articles by this author:
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/ Giorgio Ghisalberti
  • Dipartimento di Elettronica e Informazione, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy
  • Other articles by this author:
  • De Gruyter OnlineGoogle Scholar
/ Stefano Ceri
  • Dipartimento di Elettronica e Informazione, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy
  • Other articles by this author:
  • De Gruyter OnlineGoogle Scholar
Published Online: 2016-10-18 | DOI: https://doi.org/10.1515/jib-2011-166

Summary

In the Life Sciences, numerous questions can be addressed only by comprehensively searching different types of data that are inherently ordered, or are associated with ranked confidence values. We previously proposed Search Computing to support the integration of the results of search engines with other data and computational resources. This paper presents how well known bioinformatics resources can be described as search services in the search computing framework and integrated analyses over such services can be carried out. An initial set of bioinformatics services has been described and registered in the search computing framework and a bioinformatics search computing (Bio-SeCo) application using these services has been created. This current prototype application, the available services that it uses, the queries that are supported, the kind of interaction that is therefore made available to the users, and the future scenarios are here described and discussed.

About the article

Published Online: 2016-10-18

Published in Print: 2011-06-01


Citation Information: Journal of Integrative Bioinformatics, Volume 8, Issue 2, Pages 148–156, ISSN (Online) 1613-4516, DOI: https://doi.org/10.1515/jib-2011-166.

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© 2011 The Author(s). Published by Journal of Integrative Bioinformatics.. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License. BY-NC-ND 4.0

Citing Articles

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[1]
Riccardo Bellazzi, Marco Masseroli, Shawn Murphy, Amnon Shabo, and Paolo Romano
BMC Bioinformatics, 2012, Volume 13, Number S14
[2]
Marco Masseroli, Matteo Picozzi, Giorgio Ghisalberti, and Stefano Ceri
BMC Bioinformatics, 2014, Volume 15, Number S1

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