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Hassani-Pak, Keywan

Journal of Integrative Bioinformatics

Editor-in-Chief: Schreiber, Falk / Hofestädt, Ralf

Managing Editor: Sommer, Björn

Ed. by Baumbach, Jan / Chen, Ming / Orlov, Yuriy / Allmer, Jens

Editorial Board: Giorgetti, Alejandro / Harrison, Andrew / Kochetov, Aleksey / Krüger, Jens / Ma, Qi / Matsuno, Hiroshi / Mitra, Chanchal K. / Pauling, Josch K. / Rawlings, Chris / Fdez-Riverola, Florentino / Romano, Paolo / Röttger, Richard / Shoshi, Alban / Soares, Siomar de Castro / Taubert, Jan / Tauch, Andreas / Yousef, Malik / Weise, Stephan

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CiteScore 2017: 0.77

SCImago Journal Rank (SJR) 2017: 0.336

Open Access
Online
ISSN
1613-4516
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Volume 8, Issue 3

Issues

Rapid development of proteomic applications with the AIBench framework

Hugo López-Fernández
  • Escuela Superior de Ingeniería Informática, University of Vigo, Edificio Politécnico, Campus Universitario As Lagoas s/n, 32004, Ourense, Spain
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/ Miguel Reboiro-Jato
  • Corresponding author
  • Escuela Superior de Ingeniería Informática, University of Vigo, Edificio Politécnico, Campus Universitario As Lagoas s/n, 32004, Ourense, Spain
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/ Daniel Glez-Peña
  • Escuela Superior de Ingeniería Informática, University of Vigo, Edificio Politécnico, Campus Universitario As Lagoas s/n, 32004, Ourense, Spain
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/ José R. Méndez Reboredo
  • Escuela Superior de Ingeniería Informática, University of Vigo, Edificio Politécnico, Campus Universitario As Lagoas s/n, 32004, Ourense, Spain
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/ Hugo M. Santos
  • REQUIMTE, Departamento de Química, Facultade de Ciências e Tecnologia, Universidade Nova de Lisboa, Lisboa, Portugal
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/ Ricardo J. Carreira
  • REQUIMTE, Departamento de Química, Facultade de Ciências e Tecnologia, Universidade Nova de Lisboa, Lisboa, Portugal
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/ José L. Capelo-Martínez / Florentino Fdez-Riverola
  • Escuela Superior de Ingeniería Informática, University of Vigo, Edificio Politécnico, Campus Universitario As Lagoas s/n, 32004 Ourense, Spain
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Published Online: 2016-10-18 | DOI: https://doi.org/10.1515/jib-2011-171

Summary

In this paper we present two case studies of Proteomics applications development using the AIBench framework, a Java desktop application framework mainly focused in scientific software development. The applications presented in this work are Decision Peptide- Driven, for rapid and accurate protein quantification, and Bacterial Identification, for Tuberculosis biomarker search and diagnosis. Both tools work with mass spectrometry data, specifically with MALDI-TOF spectra, minimizing the time required to process and analyze the experimental data.

About the article

Published Online: 2016-10-18

Published in Print: 2011-12-01


Citation Information: Journal of Integrative Bioinformatics, Volume 8, Issue 3, Pages 16–30, ISSN (Online) 1613-4516, DOI: https://doi.org/10.1515/jib-2011-171.

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© 2011 The Author(s). Published by Journal of Integrative Bioinformatics.. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License. BY-NC-ND 4.0

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Hugo López-Fernández, José E. Araújo, Susana Jorge, Daniel Glez-Peña, Miguel Reboiro-Jato, Hugo M. Santos, Florentino Fdez-Riverola, and José L. Capelo
Computer Methods and Programs in Biomedicine, 2018, Volume 155, Page 1

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