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Journal of Integrative Bioinformatics

Editor-in-Chief: Schreiber, Falk / Hofestädt, Ralf

Managing Editor: Sommer, Björn

Ed. by Baumbach, Jan / Chen, Ming / Orlov, Yuriy / Allmer, Jens

Editorial Board: Giorgetti, Alejandro / Harrison, Andrew / Kochetov, Aleksey / Krüger, Jens / Ma, Qi / Matsuno, Hiroshi / Mitra, Chanchal K. / Pauling, Josch K. / Rawlings, Chris / Fdez-Riverola, Florentino / Romano, Paolo / Röttger, Richard / Shoshi, Alban / Soares, Siomar de Castro / Taubert, Jan / Tauch, Andreas / Yousef, Malik / Weise, Stephan / Hassani-Pak, Keywan


CiteScore 2018: 0.90

SCImago Journal Rank (SJR) 2018: 0.315

Open Access
Online
ISSN
1613-4516
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Volume 9, Issue 2

Issues

Analysis of high-throughput plant image data with the information system IAP

Christian Klukas
  • Corresponding author
  • Research Group Image Analysis, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, OT Gatersleben, 06466 Stadt Seeland, Germany
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  • Other articles by this author:
  • De Gruyter OnlineGoogle Scholar
/ Jean-Michel Pape
  • Research Group Image Analysis, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, OT Gatersleben, 06466 Stadt Seeland, Germany
  • Other articles by this author:
  • De Gruyter OnlineGoogle Scholar
/ Alexander Entzian
  • Research Group Image Analysis, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, OT Gatersleben, 06466 Stadt Seeland, Germany
  • Other articles by this author:
  • De Gruyter OnlineGoogle Scholar
Published Online: 2016-10-18 | DOI: https://doi.org/10.1515/jib-2012-191

Summary

This work presents a sophisticated information system, the Integrated Analysis Platform (IAP), an approach supporting large-scale image analysis for different species and imaging systems. In its current form, IAP supports the investigation of Maize, Barley and Arabidopsis plants based on images obtained in different spectra.

Several components of the IAP system, which are described in this work, cover the complete end-to-end pipeline, starting with the image transfer from the imaging infrastructure, (grid distributed) image analysis, data management for raw data and analysis results, to the automated generation of experiment reports.

About the article

Published Online: 2016-10-18

Published in Print: 2012-06-01


Citation Information: Journal of Integrative Bioinformatics, Volume 9, Issue 2, Pages 16–18, ISSN (Online) 1613-4516, DOI: https://doi.org/10.1515/jib-2012-191.

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© 2012 The Author(s). Published by Journal of Integrative Bioinformatics.. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License. BY-NC-ND 4.0

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