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Journal of Integrative Bioinformatics

Editor-in-Chief: Schreiber, Falk / Hofestädt, Ralf

Managing Editor: Sommer, Björn

Ed. by Baumbach, Jan / Chen, Ming / Orlov, Yuriy / Allmer, Jens

Editorial Board: Giorgetti, Alejandro / Harrison, Andrew / Kochetov, Aleksey / Krüger, Jens / Ma, Qi / Matsuno, Hiroshi / Mitra, Chanchal K. / Pauling, Josch K. / Rawlings, Chris / Fdez-Riverola, Florentino / Romano, Paolo / Röttger, Richard / Shoshi, Alban / Soares, Siomar de Castro / Taubert, Jan / Tauch, Andreas / Yousef, Malik / Weise, Stephan / Hassani-Pak, Keywan

CiteScore 2018: 0.90

SCImago Journal Rank (SJR) 2018: 0.315

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Volume 12, Issue 2


Specifications of Standards in Systems and Synthetic Biology

Falk Schreiber
  • Corresponding author
  • Faculty of IT, Monash University, Clayton, Australia & Martin Luther University Halle Wittenberg, Wittenberg, Germany
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  • Other articles by this author:
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/ Gary D. Bader / Martin Golebiewski / Michael Hucka / Benjamin Kormeier / Nicolas Le Novère / Chris Myers / David Nickerson / Björn Sommer / Dagmar Waltemath
  • Faculty of IT, Monash University, Clayton, Australia & Martin Luther University Halle Wittenberg, Wittenberg, Germany
  • University of Rostock, Rostock, Germany
  • Other articles by this author:
  • De Gruyter OnlineGoogle Scholar
/ Stephan Weise
  • Faculty of IT, Monash University, Clayton, Australia & Martin Luther University Halle Wittenberg, Wittenberg, Germany
  • Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
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Published Online: 2016-10-18 | DOI: https://doi.org/10.1515/jib-2015-258


Standards shape our everyday life. From nuts and bolts to electronic devices and technological processes, standardised products and processes are all around us. Standards have technological and economic benefits, such as making information exchange, production, and services more efficient. However, novel, innovative areas often either lack proper standards, or documents about standards in these areas are not available from a centralised platform or formal body (such as the International Standardisation Organisation).

Systems and synthetic biology is a relatively novel area, and it is only in the last decade that the standardisation of data, information, and models related to systems and synthetic biology has become a community-wide effort. Several open standards have been established and are under continuous development as a community initiative. COMBINE, the ‘COmputational Modeling in BIology’ NEtwork [1] has been established as an umbrella initiative to coordinate and promote the development of the various community standards and formats for computational models. There are yearly two meeting, HARMONY (Hackathons on Resources for Modeling in Biology), Hackathon-type meetings with a focus on development of the support for standards, and COMBINE forums, workshop-style events with oral presentations, discussion, poster, and breakout sessions for further developing the standards. For more information see http://co.mbine.org/.

So far the different standards were published and made accessible through the standards’ web-pages or preprint services. The aim of this special issue is to provide a single, easily accessible and citable platform for the publication of standards in systems and synthetic biology. This special issue is intended to serve as a central access point to standards and related initiatives in systems and synthetic biology, it will be published annually to provide an opportunity for standard development groups to communicate updated specifications.

About the article

Published Online: 2016-10-18

Published in Print: 2015-06-01

Citation Information: Journal of Integrative Bioinformatics, Volume 12, Issue 2, Pages 1–3, ISSN (Online) 1613-4516, DOI: https://doi.org/10.1515/jib-2015-258.

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© 2015 The Author(s). Published by Journal of Integrative Bioinformatics.. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License. BY-NC-ND 4.0

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