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Journal of Integrative Bioinformatics

Editor-in-Chief: Schreiber, Falk / Hofestädt, Ralf

Managing Editor: Sommer, Björn

Ed. by Baumbach, Jan / Chen, Ming / Orlov, Yuriy / Allmer, Jens

Editorial Board: Giorgetti, Alejandro / Harrison, Andrew / Kochetov, Aleksey / Krüger, Jens / Ma, Qi / Matsuno, Hiroshi / Mitra, Chanchal K. / Pauling, Josch K. / Rawlings, Chris / Fdez-Riverola, Florentino / Romano, Paolo / Röttger, Richard / Shoshi, Alban / Soares, Siomar de Castro / Taubert, Jan / Tauch, Andreas / Yousef, Malik / Weise, Stephan / Hassani-Pak, Keywan


CiteScore 2017: 0.77

SCImago Journal Rank (SJR) 2017: 0.336

Open Access
Online
ISSN
1613-4516
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Volume 12, Issue 2

Issues

The CellML 1.1 Specification

Autumn Cuellar
  • Auckland Bioengineering Institute, University of Auckland, Auckland, United States of America
  • Design Science, Inc, CA, Long Beach, United States of America
  • Other articles by this author:
  • De Gruyter OnlineGoogle Scholar
/ Warren Hedley
  • Auckland Bioengineering Institute, University of Auckland, Auckland, United States of America
  • Dassault Systèmes, CA, Long Beach, United States of America
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/ Melanie Nelson
  • Physiome Sciences, NJ, Princeton, United States of America
  • MRN Consulting, Inc, CA, Acworth, United States of America
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/ Catherine Lloyd
  • Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand
  • CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090, Vienna, Austria
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/ Matt Halstead
  • Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand
  • Performance Lab Ltd, Auckland, New Zealand
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/ David Bullivant / David Nickerson / Peter Hunter / Poul Nielsen
  • Corresponding author
  • Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand
  • Auckland Bioengineering Institute, University of Auckland, Auckland, United States of America
  • Department of Engineering Science, Faculty of Engineering, University of Auckland, Auckland, New Zealand
  • Email
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Published Online: 2016-10-18 | DOI: https://doi.org/10.1515/jib-2015-259

Summary

This document specifies CellML 1.1, an XML-based language for describing and exchanging models of cellular and subcellular processes. MathML embedded in CellML documents is used to define the underlying mathematics of models. Models consist of a network of re- usable components, each with variables and equations manipulating those variables. Models may import other models to create systems of increasing complexity. Metadata may be embedded in CellML documents using RDF.

About the article

Published Online: 2016-10-18

Published in Print: 2015-06-01


Citation Information: Journal of Integrative Bioinformatics, Volume 12, Issue 2, Pages 4–85, ISSN (Online) 1613-4516, DOI: https://doi.org/10.1515/jib-2015-259.

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© 2015 The Author(s). Published by Journal of Integrative Bioinformatics.. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License. BY-NC-ND 4.0

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