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Journal of Integrative Bioinformatics

Editor-in-Chief: Schreiber, Falk / Hofestädt, Ralf

Managing Editor: Sommer, Björn

Ed. by Baumbach, Jan / Chen, Ming / Orlov, Yuriy / Allmer, Jens

Editorial Board: Giorgetti, Alejandro / Harrison, Andrew / Kochetov, Aleksey / Krüger, Jens / Ma, Qi / Matsuno, Hiroshi / Mitra, Chanchal K. / Pauling, Josch K. / Rawlings, Chris / Fdez-Riverola, Florentino / Romano, Paolo / Röttger, Richard / Shoshi, Alban / Soares, Siomar de Castro / Taubert, Jan / Tauch, Andreas / Yousef, Malik / Weise, Stephan

4 Issues per year


CiteScore 2016: 0.93

SCImago Journal Rank (SJR) 2016: 0.416

Open Access
Online
ISSN
1613-4516
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Synthetic Biology Open Language (SBOL) Version 2.2.0

Robert Sidney Cox III / Curtis Madsen / James Alastair McLaughlin / Tramy Nguyen / Nicholas Roehner / Bryan Bartley / Jacob Beal / Michael Bissell / Kiri Choi / Kevin Clancy / Raik Grünberg / Chris Macklin / Goksel Misirli / Ernst Oberortner / Matthew Pocock / Meher Samineni / Michael Zhang / Zhen Zhang / Zach Zundel / John H. Gennari / Chris Myers / Herbert Sauro / Anil Wipat
Published Online: 2018-04-02 | DOI: https://doi.org/10.1515/jib-2018-0001

Abstract

Synthetic biology builds upon the techniques and successes of genetics, molecular biology, and metabolic engineering by applying engineering principles to the design of biological systems. The field still faces substantial challenges, including long development times, high rates of failure, and poor reproducibility. One method to ameliorate these problems would be to improve the exchange of information about designed systems between laboratories. The synthetic biology open language (SBOL) has been developed as a standard to support the specification and exchange of biological design information in synthetic biology, filling a need not satisfied by other pre-existing standards. This document details version 2.2.0 of SBOL that builds upon version 2.1.0 published in last year’s JIB special issue. In particular, SBOL 2.2.0 includes improved description and validation rules for genetic design provenance, an extension to support combinatorial genetic designs, a new class to add non-SBOL data as attachments, a new class for genetic design implementations, and a description of a methodology to describe the entire design-build-test-learn cycle within the SBOL data model.

Keywords: Synthetic Biology; Synthetic Biology Open Language; Standards

About the article

Received: 2018-01-01

Accepted: 2018-02-01

Published Online: 2018-04-02


Citation Information: Journal of Integrative Bioinformatics, 20180001, ISSN (Online) 1613-4516, DOI: https://doi.org/10.1515/jib-2018-0001.

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©2018, Robert Sidney Cox et al., published by De Gruyter, Berlin/Boston. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License. BY-NC-ND 4.0

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