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Journal of Non-Equilibrium Thermodynamics

Founded by Keller, Jürgen U.

Editor-in-Chief: Hoffmann, Karl Heinz

Managing Editor: Prehl, Janett / Schwalbe, Karsten

Ed. by Michaelides, Efstathios E. / Rubi, J. Miguel

4 Issues per year


IMPACT FACTOR 2016: 1.714

CiteScore 2016: 1.38

SCImago Journal Rank (SJR) 2016: 0.402
Source Normalized Impact per Paper (SNIP) 2016: 0.886

Online
ISSN
1437-4358
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Volume 34, Issue 4 (Jan 2009)

Issues

Non-Equilibrium Thermodynamics of Gene Expression and Transcriptional Regulation

Enrique Hernández Lemus
  • Corresponding author
  • Department of Computational Genomics, National Institute of Genomic Medicine, Periférico Sur No. 4124, Torre Zafiro II, Piso 5, Col. Ex Rancho de Anzaldo, Álvaro Obregón 01900, México, D.F. México
  • Center for the Sciences of Complexity, Universidad Nacional Autónoma de México, Torre de Ingeniería, Piso 6, Circuito Escolar s/n, Ciudad Universitaria, Coyoacán, 04510, México, D.F. México
  • Other articles by this author:
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Published Online: 2010-01-11 | DOI: https://doi.org/10.1515/JNETDY.2009.019

Abstract

In recent times whole-genome gene expression analysis has turned out to be a highly important tool to study the coordinated function of a very large number of genes within their corresponding cellular environment, especially in relation to phenotypic diversity and disease. A wide variety of methods of quantitative analysis has been developed to cope with high throughput data sets generated by gene expression profiling experiments. Due to the complexity associated with transcriptomics, especially in the case of gene regulation phenomena, most of these methods are of a probabilistic or statistical nature. Even if these methods have reached a central status in the development of an integrative, systematic understanding of the associated biological processes, they very rarely constitute a concrete guide to the actual physicochemical mechanisms behind biological function, and the role of these methods is more on a hypotheses generating line. An important improvement could lie in the development of a thermodynamic theory for gene expression and transcriptional regulation that will build the foundations for a proper integration of the vast amount of molecular biophysical data and could lead, in the future, to a systemic view of genetic transcription and regulation.

About the article

*Corresponding author


Received: 2009-04-03

Accepted: 2009-04-22

Published Online: 2010-01-11

Published in Print: 2009-12-01


Citation Information: Journal of Non-Equilibrium Thermodynamics, ISSN (Online) 1437-4358, ISSN (Print) 0340-0204, DOI: https://doi.org/10.1515/JNETDY.2009.019.

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[1]
Yaşar Demirel
Journal of Non-Newtonian Fluid Mechanics, 2010, Volume 165, Number 17-18, Page 953
[2]
Enrique Hernández-Lemus
Journal of Biological Physics, 2011, Volume 37, Number 2, Page 167
[3]
B. Roy Frieden and Raymond J. Hawkins
Physical Review E, 2010, Volume 82, Number 6

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