Abstract
C17H20F2N4O3S, triclinic, P1 (no. 1), a = 6.0020(12) Å, b = 6.7650(14) Å, c = 11.831(2) Å, α = 89.39(3)°, β = 86.29(3)°, γ = 66.50(3)°, V = 439.55(15) Å3, Z = 1, Rgt(F) = 0.0543, wRref(F2) = 0.1568, T = 293(2) K.

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C17H20F2N4O3S, triclinic, P1 (no. 1), a = 6.0020(12) Å, b = 6.7650(14) Å, c = 11.831(2) Å, α = 89.39(3)°, β = 86.29(3)°, γ = 66.50(3)°, V = 439.55(15) Å3, Z = 1, Rgt(F) = 0.0543, wRref(F2) = 0.1568, T = 293(2) K.
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Tables 1–3 contain details of the methods used and a list of the atoms including atomic coordinates and displacement parameters.
Data collection and handling.
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).
Fractional coordinates and atomic displacement parameters (Å2).
The title compound was prepared by a literature method [1]. 16.5 g (50.4 mmol) of tert-butyl [(2R,3S)-5-oxo-2-(2,5-difluorophenyl)tetrahydro-2H-pyran-3-yl]carbamate, 19.6 g (56.8 mmol) of pyrazole salt (benzenesulfonic acid and 2-(methylsulfonyl)-2,4,5,6-tetrahydropyrrolo[3,4-c]pyrazole) and 250 mL of dimethylacetamide were mixed while stirring. The resulting homogeneous solution was cooler to 268 K and 14 g (66 mmol) of sodium triacetoxyborohydride was added portionwise. The mixture was stirred for 2 h and quenched by the slow addition of a mixture of NH4OH (17 mL) and water (35 mL). The slurry was heated to 323 K and then cooled to 295 K and filtered. The wet cake was washed with 5:1 dimethylacetamide/water (135 mL) and then water (130 mL) and dried under vacuum/N2 sweep to afford (22 g, 96%) of the title compound as a white solid. The primary product 22 g (42 mmol) 65 mL of dimethylacetamide, and 85 mL of water were mixed, than 25 mL of H2SO4 in 45 mL of water were added and stirred for 20 h at room temperature. NH4OH was added until the pH was 10.2. The slurry was filtered and washed with water (2 × 30 mL) and dried under vacuum/N2 to give the title compound (14.1 g, 92%). Crystallization from ethyl acetate gave a product with greater than 99% purity. Prism-shaped crystals were obstained by slow evaporation of an ethyl acetate solution at room temperature for about 20 d.
The hydrogen atoms were placed on calculated positions (SHELX: AFIX 13, 23, 33, 43 and 93 option) [6]. The Flack-parameter refines to a value near zero, which verifys the absolute configuration of the title molecule (see the figure).
Experimental, clinical, and epidemiological studies have shown that type 2 diabetes mellitus is a growing epidemic affecting approximately 220 million people worldwide [1, 2]. Commercial proof of concept for DPP-4 inhibitors has been established with sitagliptin, Merck's lead DPP-4 inhibitor; Omarigliptin, which was the first DPP-4 inhibitor, approved by the FDA in October 2006. Omarigliptin (MK-3102) prolong the circulating half-life of glucagonlike peptide 1 (GLP-1) and glucose-dependant insulinotropic polypeptide (GIP), incretin hormones that stimulate insulin secretion in a glucose-dependent manner. Additionally, GLP-1 has been shown to inhibit glucagon release, decrease gastric emptying, and promote the regeneration and differentiation of islet b-cells. By increasing the circulating concentration GLP-1 and GIP, DPP-4 inhibitors improve glucose control in patients with type 2 diabetes.
The molecular structure of the title compound (drug name: Omarigliptin) is shown in the Figure. All bond lengths and angles are within normal ranges. The title molecule consists of four rings, A(C1—C2—C3—C4—C5—C6), B(C7—C8—C9—C10—C11—O1), C(C12—C13—C15—C16—N2) and D(C13—C15—C14—N3—N4). The dihedral angle between C and D is 2.3(3)°. The six-members ring B is in the typical chair conformation. In the molecular structure of the title compound, there are three chiral carbon atoms, C7, C8 and C10. The configuration of the chiral carbon atoms can be obtained directly from the crystal structure: C7, C8 and C10 are R, S, and R, respectively. In the crystal there are no classical intermolecular hydrogen bonds. Surprisingly, the F2 atom is close to one of the hydrogen atoms of the NH2 group as well as to the adjacent CH group. Thus a very weak bifurcated intramolecular N—H⋯ F and a C—H⋯F hydrogen bond seem to be very effective in the stabilization of the crystal structure. In the crystal structure, there are no π−π stacking interactions, as the centroid to centroid distance between the two nearest furan rings is larger than 5 Å.
This work is supported by PhD Research Startup Foundation of Jinling Institute of Technology (JIT-B-201323). We also thank the Center of Testing and Analysis, Nanjing University. The authors thank the responsible editor for supplying the figure.
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Received: 2015-11-18
Accepted: 2016-03-11
Published Online: 2016-04-07
Published in Print: 2016-09-01
Citation Information: Zeitschrift für Kristallographie - New Crystal Structures, Volume 231, Issue 3, Pages 763–765, ISSN (Online) 2197-4578, ISSN (Print) 1433-7266, DOI: https://doi.org/10.1515/ncrs-2015-0260.
©2016 Kun-Yan Wang et al., published by De Gruyter.. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License. BY-NC-ND 3.0
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