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Zeitschrift für Kristallographie - New Crystal Structures

Editor-in-Chief: Huppertz, Hubert

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2197-4578
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Volume 231, Issue 3
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Crystal structure of 3-tert-butyl-3-hydroxy-1,3-dihydro-2H-pyrrolo[3,2-c]pyridin-2-one, C11H14N2O2

Gamal A. El-Hiti
  • Corresponding author
  • Cornea Research Chair, Department of Optometry, College of Applied Medical Sciences, King Saud University, P. O. Box 10219, Riyadh 11433, Saudi Arabia
  • Email
  • Other articles by this author:
  • De Gruyter OnlineGoogle Scholar
/ Keith Smith / Amany S. Hegazy / Saud A. Alanazi
  • Department of Optometry, College of Applied Medical Sciences, King Saud University, P. O. Box 10219, Riyadh 11433, Saudi Arabia
  • Other articles by this author:
  • De Gruyter OnlineGoogle Scholar
/ Benson M. Kariuki
Published Online: 2016-04-02 | DOI: https://doi.org/10.1515/ncrs-2015-0276

Abstract

C11H14N2O2, orthorhombic, P212121 (no. 19), a = 7.5411(2) Å, b = 11.5148(2) Å, c = 12.5370(2) Å, V = 1088.64(4) Å3, Z = 4, Rgt(F) = 0.0301, wRref(F2) = 0.0826, T = 296 K.

This article offers supplementary material which is provided at the end of the article.

CCDC no.:: 1456766

The crystal structure is shown in the figure, Tables 13 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1:

Data collection and handling.

Table 2:

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Table 3:

Fractional atomic coordinate and displacement parameters (Å2).

Source of material

The title compound was prepared as previously reported via double lithiation of 4-pivaloylaminopyridine with n-BuLi (2.1 mole equivalents) in anhydrous THF at 0°C for 3 h followed by a reaction with carbon monoxide. The crude product obtained was purified by crystallization from ethyl acetate to give the title compound in 65% yield as colourless crystals [1].

Discussion

Synthesis of azaindoles is of great interest due to their growing biological applications [2]. The asymmetric unit consists of one molecule of C11H14N2O2. In the crystal structure, the hydroxyl group accepts one N—H⋯O hydrogen bond from a neighbouring molecule (N1—H1⋯O2 angle = 169.63°, N1⋯O2 distance = 2.851 Å) and donates one O—H⋯N bond to another molecule (O2—H2⋯N2 angle = 172.48°, O2⋯N2 distance = 2.710 Å) leading to a 3-D network. An extremely weak C—H⋯O contact is also observed (C5—H5⋯O1 angle = 173.13°, C⋯O distance = 3.362 Å) resulting in R22(9) graph set descriptor for this motif [3] between two molecules. The shortest C—H⋯O contact in the related 3-isopropyl-1-methyl-1,3-dihydro-2H-pyrrolo[3,2-c]pyridin-2-one [4] involves a tertiary C atom (C—H⋯O angle = 144.18° and C⋯O distance = 3.292 Å).

Experimental details

H atoms were placed in calculated positions and refined using a riding model, with Uiso(H) set to 1.2Ueq(C) and C—H and N—H distance of 0.93 and 0.86 Å respectively. The exceptions were the methyl (C—H = 0.96 Å) and hydroxyl (O—H = 0.86 Å) groups which were allowed to rotate around the C—C bond (HFIX 137 in SHELX [6]) and C—O bond (HFIX 147), with Uiso(H) set to 1.5Ueq(C/O).

Acknowledgements:

The authors extend their appreciation to the Deanship of Scientific Research at King Saud University for its funding for this research through the research group project RGP-VPP-239 and to Cardiff University for continued support.

References

  • 1.

    Smith, K.; El-Hiti, G. A.; Pritchard, G. J.; Hamilton, A.: Carbonylation of various organolithium reagents. A novel approach to heterocycles via intramolecular trapping of aromatic acyllithiums. J. Chem. Soc., Perkin Trans. 1 (1999) 2299–2303. Google Scholar

  • 2.

    Popowycz, F.; Routier, S.; Joseph, B.; Mérour, J.-Y.: Synthesis and reactivity of 7-azaindole (1H-pyrrolo[2,3-b]pyridine). Tetrahedron 63 (2007) 1031–1064. Google Scholar

  • 3.

    Etter, M. C.; MacDonald, J. C.; Bernstein, J.: Graph-set analysis of hydrogen-bond patterns in organic crystals. Acta Crystallogr. B46 (1990) 256–262. Google Scholar

  • 4.

    Harrison, W. T. A.; Male, L.; Hursthouse, M. B.: 3-isopropyl-1-methyl-1,3-dihydro-2H-pyrrolo[3,2-c]pyridin-2-one. University of Southampton, Crystal Structure Report Archive (2007) 337. Google Scholar

  • 5.

    Agilent: CrysAlisPRO. Agilent Technologies, Yarnton, England, 2014. Google Scholar

  • 6.

    Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122. Web of ScienceGoogle Scholar

  • 7.

    Farrugia, L. J.: WinGX and ORTEP for Windows: an update. J. Appl. Crystallogr. 45 (2012) 849–854. Web of ScienceGoogle Scholar

  • 8.

    Cambridge Soft: ChemDraw Ultra. Cambridge Soft Corporation, Cambridge, Massachusetts, USA, 2001. Google Scholar

About the article

Corresponding author: Gamal A. El-Hiti, Cornea Research Chair, Department of Optometry, College of Applied Medical Sciences, King Saud University, P. O. Box 10219, Riyadh 11433, Saudi Arabia


Received: 2015-12-01

Accepted: 2016-03-01

Published Online: 2016-04-02

Published in Print: 2016-09-01


Funding Source: Deanship of Scientific Research

Award identifier / Grant number: RGP-VPP-239

The authors extend their appreciation to the Deanship of Scientific Research at King Saud University for its funding for this research through the research group project RGP-VPP-239 and to Cardiff University for continued support.


Citation Information: Zeitschrift für Kristallographie - New Crystal Structures, Volume 231, Issue 3, Pages 809–810, ISSN (Online) 2197-4578, ISSN (Print) 1433-7266, DOI: https://doi.org/10.1515/ncrs-2015-0276.

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©2016 Gamal A. El-Hiti et al., published by De Gruyter.. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License. BY-NC-ND 3.0

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