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Zeitschrift für Kristallographie - New Crystal Structures

Editor-in-Chief: Huppertz, Hubert

Ed. by Reiß, Guido

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2197-4578
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Volume 231, Issue 4
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Crystal structure of 3-tert-butyl-7-azadioxindole, C11H14N2O2

Gamal A. El-Hiti
  • Corresponding author
  • Cornea Research Chair, Department of Optometry, College of Applied Medical Sciences, King Saud University, P. O. Box 10219, Riyadh 11433, Saudi Arabia
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/ Keith Smith
  • School of Chemistry, Cardiff University, Main Building, Park Place, Cardiff CF10 3AT, United Kingdom of Great Britain and Northern Ireland
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/ Amany S. Hegazy
  • School of Chemistry, Cardiff University, Main Building, Park Place, Cardiff CF10 3AT, United Kingdom of Great Britain and Northern Ireland
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/ Ali M. Masmali
  • Cornea Research Chair, Department of Optometry, College of Applied Medical Sciences, King Saud University, P. O. Box 10219, Riyadh 11433, Saudi Arabia
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/ Benson M. Kariuki
  • School of Chemistry, Cardiff University, Main Building, Park Place, Cardiff CF10 3AT, United Kingdom of Great Britain and Northern Ireland
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Published Online: 2016-06-22 | DOI: https://doi.org/10.1515/ncrs-2016-0054

Abstract

C11H14N2O2, orthorhombic, P212121 (no. 19), a = 7.3227(3) Å, b = 10.9955(4) Å, c = 26.3709(9) Å, V = 2123.30(14) Å3, Z = 8, Rgt(F) = 0.0372, wRref(F2) = 0.0907, T = 150 K.

This article offers supplementary material which is provided at the end of the article.

CCDC no.:: 1483816

The asymmetric unit of the title crystal structure is shown in the figure. Tables 1 and 2 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

Source of material

3-tert-Butyl-7-azadioxindole was prepared from lithiation of 2-pivaloylaminopyridine with 2.1 mole equivalents of n-BuLi for 15 min at –78 °C and 2 h at 0 °C in anhydrous tetrahydrofuran followed by reaction with carbon monoxide for 2 h [1]. Crystallization of the crude product using a mixture of diethyl ether and ethyl acetate (in 1:2 ratio by volume) gave the title compound as colourless crystals in 62% yield [1].

Experimental details

H atoms were placed in calculated positions and refined using a riding model, with Uiso(H) set to 1.2Ueq(C) and C—H and N—H distances of 0.93 and 0.86 Å, respectively. The exceptions were the methyl (C—H = 0.96 Å) and hydroxyl (O—H = 0.86 Å) groups which were allowed to rotate around the C—C bond (HFIX 137 in SHELX[4]) and C—O bond (HFIX 147), with Uiso(H) set to 1.5Ueq(C/O).

Discussion

Azaindoles represent an important class of pharmacologically active compounds [2, 3]. The asymmetric unit of the title structure comprises two independent molecules. The two molecules are linked by N—H⋯N (angle = 144.5°, N⋯N distance = 2.936(3) Å) and N—H⋯O (angle = 150.5°, C⋯O distance = 2.835(3) Å) hydrogen bonds forming rings which can be classified by the R22(8) graph set. Additional O—H⋯O (angle = 165.7°, O⋯O distance = 2.989(3) Å) and O—H⋯N (angle = 163.2°, O⋯N distance = 2.802(3) Å) hydrogen bonds lead to the formation of a three-dimensional network.

Acknowledgements:

The authors extend their appreciation to the College of Applied Medical Sciences Research Center and the Deanship of Scientific Research at King Saud University for their funding of this research.

References

  • 1.

    Smith, K.; El-Hiti, G. A.; Pritchard, G. J.; Hamilton, A.: Carbonylation of various organolithium reagents. A novel approach to heterocycles via intramolecular trapping of aromatic acyllithiums. J. Chem. Soc., Perkin Trans. 1 (1999) 2299–2303. Google Scholar

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    Manchester, J. I.; Dussault, D. D.; Rose, J. A.; Ann Boriack-Sjodin, P.; Uria-Nickelsen, M.; Ioannidis, G.; Bist, S.; Fleming, P.; Hull, K. G.: Discovery of a novel azaindole class of antibacterial agents targeting the ATPase domains of DNA gyrase and Topoisomerase IV. Bioorg. Med. Chem. Lett. 22 (2012) 5150–5156. Google Scholar

  • 3.

    Popowycz, F.; Routier, S.; Joseph, B.; Mérour, J.-Y.: Synthesis and reactivity of 7-azaindole (1H-pyrrolo[2,3-b]pyridine). Tetrahedron 63 (2007) 1031–1064. Web of ScienceGoogle Scholar

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    Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122. Google Scholar

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    Agilent. CrysAlis PRO. Agilent technologies, Yarnton, England, 2014. Google Scholar

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    Farrugia, L. J.: WinGX and ORTEP for Windows: an update. J. Appl. Crystallogr. 45 (2012) 849–854. Google Scholar

About the article

Received: 2016-02-12

Accepted: 2016-06-07

Published Online: 2016-06-22

Published in Print: 2016-12-01


Citation Information: Zeitschrift für Kristallographie - New Crystal Structures, Volume 231, Issue 4, Pages 1069–1070, ISSN (Online) 2197-4578, ISSN (Print) 1433-7266, DOI: https://doi.org/10.1515/ncrs-2016-0054.

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©2016 Gamal A. El-Hiti et al., published by De Gruyter.. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License. BY-NC-ND 3.0

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