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Oceanological and Hydrobiological Studies


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Volume 42, Issue 4

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A study on the phylogeny and phylogeography of a marine cosmopolite diatom from the southern Black Sea

Özgür Baytut
  • Faculty of Sciences and Arts, Department of Biology, The University of Ondokuz Mayıs, 55139, Kurupelit-Samsun, Turkey
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Published Online: 2014-01-23 | DOI: https://doi.org/10.2478/s13545-013-0096-5

Abstract

A single-cell PCR method was applied to Pseudo-nitzschia pungens strains from the southern Black Sea. Based on the aligment set of the LSU D1-D3 region, a Bayesian molecular phylogeny analysis and a parsimony network analysis were used to investigate phylogenetic clades (Clades I-III) in P. pungens and to determine the ancestral clades. The parsimony network analysis also demonstrated that ancestral haplotypes belonged to Clade II, residing around the northeastern Pacific, while Clade I was distributed globally but antitropicaly. According to the findings of this study, the Black Sea strain (Clade III) shows a global phylogeographic pattern.

Keywords: Pseudo-nitzschia; Black Sea; LSU; Single cell PCR; Bayesian Inference; Network Analysis

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About the article

Published Online: 2014-01-23

Published in Print: 2013-12-01


Citation Information: Oceanological and Hydrobiological Studies, Volume 42, Issue 4, Pages 406–411, ISSN (Online) 1897-3191, ISSN (Print) 1730-413X, DOI: https://doi.org/10.2478/s13545-013-0096-5.

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© 2013 Faculty of Oceanography and Geography, University of Gdańsk, Poland. This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License. BY-NC-ND 3.0

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