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Pure and Applied Chemistry

The Scientific Journal of IUPAC

Ed. by Burrows, Hugh / Stohner, Jürgen


IMPACT FACTOR 2018: 2.350
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CiteScore 2018: 4.66

SCImago Journal Rank (SJR) 2018: 1.240
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1365-3075
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Volume 83, Issue 8

Issues

Enzymatic catalysis of proton transfer and decarboxylation reactions

John P. Richard
Published Online: 2011-07-08 | DOI: https://doi.org/10.1351/PAC-CON-11-02-05

Deprotonation of carbon and decarboxylation at enzyme active sites proceed through the same carbanion intermediates as for the uncatalyzed reactions in water. The mechanism for the enzymatic reactions can be studied at the same level of detail as for nonenzymatic reactions, using the mechanistic tools developed by physical organic chemists. Triosephosphate isomerase (TIM)-catalyzed interconversion of D-glyceraldehyde 3-phosphate (GAP) and dihydroxyacetone phosphate (DHAP) is being studied as a prototype for enzyme-catalyzed proton transfer, and orotidine monophosphate decarboxylase (OMPDC)-catalyzed decarboxylation of orotidine 5'-monophosphate (OMP) is being studied as a prototype for enzyme-catalyzed decarboxylation. 1H NMR spectroscopy is an excellent analytical method to monitor proton transfer to and from carbon catalyzed by these enzymes in D2O. Studies of these partial enzyme-catalyzed exchange reactions provide novel insight into the stability of carbanion reaction intermediates, which is not accessible in studies of the full enzymatic reaction. The importance of flexible enzyme loops and the contribution of interactions between these loops and the substrate phosphodianion to the enzymatic rate acceleration are discussed. The similarity in the interactions of OMPDC and TIM with the phosphodianion of bound substrate is emphasized.

Keywords: carbanions; carbon acids; enzyme catalysis; isotopes; kinetics; proton transfer; structure-reactivity

Conference

International Conference on Physical Organic Chemistry (ICPOC-20), International Conference on Physical Organic Chemistry, ICPOC, Physical Organic Chemistry, 20th, Busan, Korea, 2010-08-22–2010-08-27

References

About the article

Published Online: 2011-07-08

Published in Print: 2011-07-08


Citation Information: Pure and Applied Chemistry, Volume 83, Issue 8, Pages 1555–1565, ISSN (Online) 1365-3075, ISSN (Print) 0033-4545, DOI: https://doi.org/10.1351/PAC-CON-11-02-05.

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