Statistical Applications in Genetics and Molecular Biology
Editor-in-Chief: Stumpf, Michael P.H.
6 Issues per year
IMPACT FACTOR 2016: 0.646
5-year IMPACT FACTOR: 1.191
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- 1544-6115
- Most Downloaded Articles
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- A General Framework for Weighted Gene Co-Expression Network Analysis by Zhang, Bin and Horvath, Steve
- Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments by Smyth, Gordon K
- A Shrinkage Approach to Large-Scale Covariance Matrix Estimation and Implications for Functional Genomics by Schäfer, Juliane and Strimmer, Korbinian
- Sensitivity to prior specification in Bayesian genome-based prediction models by Lehermeier, Christina/ Wimmer, Valentin/ Albrecht, Theresa/ Auinger, Hans-Jürgen/ Gianola, Daniel/ Schmid, Volker J. and Schön, Chris-Carolin
- Detecting Differential Expression in RNA-sequence Data Using Quasi-likelihood with Shrunken Dispersion Estimates by Lund, Steven P./ Nettleton, Dan/ McCarthy, Davis J. and Smyth, Gordon K.
- TopKLists: a comprehensive R package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked lists by Schimek, Michael G./ Budinská, Eva/ Kugler, Karl G./ Švendová, Vendula/ Ding, Jie and Lin, Shili
- Model selection for prognostic time-to-event gene signature discovery with applications in early breast cancer data by Ahdesmäki, Miika/ Lancashire, Lee/ Proutski, Vitali/ Wilson, Claire/ Davison, Timothy S./ Harkin, D. Paul and Kennedy, Richard D.
- Improved variational Bayes inference for transcript expression estimation by Papastamoulis, Panagiotis/ Hensman, James/ Glaus, Peter and Rattray, Magnus
- Normalization, bias correction, and peak calling for ChIP-seq by Diaz, Aaron/ Park, Kiyoub/ Lim, Daniel A. and Song, Jun S.
- Robustness of the linear mixed effects model to error distribution assumptions and the consequences for genome-wide association studies by Warrington, Nicole M./ Tilling, Kate/ Howe, Laura D./ Paternoster, Lavinia/ Pennell, Craig E./ Wu, Yan Yan and Briollais, Laurent
- A Bayesian mixture model for chromatin interaction data by Niu, Liang and Lin, Shili
- A Two-Stage Poisson Model for Testing RNA-Seq Data by Auer, Paul L. and Doerge, Rebecca W
- The NBP Negative Binomial Model for Assessing Differential Gene Expression from RNA-Seq by Di, Yanming/ Schafer, Daniel W/ Cumbie, Jason S and Chang, Jeff H
- Permutation P-values Should Never Be Zero: Calculating Exact P-values When Permutations Are Randomly Drawn by Phipson, Belinda and Smyth, Gordon K
- Including Probe-Level Measurement Error in Robust Mixture Clustering of Replicated Microarray Gene Expression by Liu, Xuejun and Rattray, Magnus
- A Sparse PLS for Variable Selection when Integrating Omics Data by Lê Cao, Kim-Anh/ Rossouw, Debra/ Robert-Granié, Christèle and Besse, Philippe
- Sparse Canonical Correlation Analysis with Application to Genomic Data Integration by Parkhomenko, Elena/ Tritchler, David and Beyene, Joseph
- Super Learner by van der Laan, Mark J./ Polley, Eric C and Hubbard, Alan E.
- Bayesian modelling of compositional heterogeneity in molecular phylogenetics by Heaps, Sarah E./ Nye, Tom M.W./ Boys, Richard J./ Williams, Tom A. and Embley, T. Martin
- GenePEN: analysis of network activity alterations in complex diseases via the pairwise elastic net by Vlassis, Nikos and Glaab, Enrico
Issues
Volume 16 (2017)
Volume 15 (2016)
Volume 14 (2015)
Volume 13 (2014)
Volume 12 (2013)
Volume 11 (2012)
Volume 10 (2011)
Volume 9 (2010)
Volume 8 (2009)
Volume 7 (2008)
Volume 6 (2007)
Volume 5 (2006)
Volume 4 (2005)
Volume 3 (2004)
Volume 2 (2003)
Volume 1 (2002)
Volume 10, Issue 1 (Jan 2011)
Invited Editorial
Measurement of Evidence and Evidence of Measurement
Vieland, Veronica J / Hodge, Susan E
Published Online: 07/20/2011
Article
Fully Moderated T-statistic for Small Sample Size Gene Expression Arrays
Yu, Lianbo / Gulati, Parul / Fernandez, Soledad / Pennell, Michael / Kirschner, Lawrence / Jarjoura, David
Published Online: 09/15/2011
Determining Coding CpG Islands by Identifying Regions Significant for Pattern Statistics on Markov Chains
Singer, Meromit / Engström, Alexander / Schönhuth, Alexander / Pachter, Lior
Published Online: 09/23/2011
Assessing Modularity Using a Random Matrix Theory Approach
Feher, Kristen / Whelan, James / Müller, Samuel
Published Online: 09/26/2011
Choice of Summary Statistic Weights in Approximate Bayesian Computation
Jung, Hsuan / Marjoram, Paul
Published Online: 09/27/2011
Genetic Linkage Analysis in the Presence of Germline Mosaicism
Weissbrod, Omer / Geiger, Dan
Published Online: 10/04/2011
Fitting Boolean Networks from Steady State Perturbation Data
Almudevar, Anthony / McCall, Matthew N. / McMurray, Helene / Land, Hartmut
Published Online: 10/05/2011
Adaptive Elastic-Net Sparse Principal Component Analysis for Pathway Association Testing
Chen, Xi
Published Online: 10/24/2011
Bayesian Learning from Marginal Data in Bionetwork Models
Bonassi, Fernando V. / You, Lingchong / West, Mike
Published Online: 10/27/2011
Unsupervised Classification for Tiling Arrays: ChIP-chip and Transcriptome
Bérard, Caroline / Martin-Magniette, Marie-Laure / Brunaud, Véronique / Aubourg, Sébastien / Robin, Stéphane
Published Online: 11/01/2011
Multiple Testing in Candidate Gene Situations: A Comparison of Classical, Discrete, and Resampling-Based Procedures
Elsäßer, Amelie / Victor, Anja / Hommel, Gerhard
Published Online: 11/02/2011
Modeling Read Counts for CNV Detection in Exome Sequencing Data
Love, Michael I. / Myšičková, Alena / Sun, Ruping / Kalscheuer, Vera / Vingron, Martin / Haas, Stefan A.
Published Online: 11/08/2011
Multiscale Characterization of Signaling Network Dynamics through Features
Capobianco, Enrico / Marras, Elisabetta / Travaglione, Antonella
Published Online: 11/20/2011
False Discovery Rate Estimation for Stability Selection: Application to Genome-Wide Association Studies
Ahmed, Ismaïl / Hartikainen, Anna-Liisa / Järvelin, Marjo-Riitta / Richardson, Sylvia
Published Online: 11/28/2011
A Markov-Chain Model for the Analysis of High-Resolution Enzymatically 18O-Labeled Mass Spectra
Valkenborg, Dirk / Burzykowski, Tomasz
Published Online: 01/06/2011
Repeated Measures Semiparametric Regression Using Targeted Maximum Likelihood Methodology with Application to Transcription Factor Activity Discovery
Tuglus, Catherine / van der Laan, Mark J.
Published Online: 01/06/2011
Learning Monotonic Genotype-Phenotype Maps
Beerenwinkel, Niko / Knupfer, Patrick / Tresch, Achim
Published Online: 01/06/2011
A Comparison of Multifactor Dimensionality Reduction and L1-Penalized Regression to Identify Gene-Gene Interactions in Genetic Association Studies
Winham, Stacey / Wang, Chong / Motsinger-Reif, Alison A
Published Online: 01/06/2011
Accuracy and Computational Efficiency of a Graphical Modeling Approach to Linkage Disequilibrium Estimation
Abel, Haley J / Thomas, Alun
Published Online: 01/06/2011
Learning from Past Treatments and Their Outcome Improves Prediction of In Vivo Response to Anti-HIV Therapy
Saigo, Hiroto / Altmann, Andre / Bogojeska, Jasmina / Müller, Fabian / Nowozin, Sebastian / Lengauer, Thomas
Published Online: 01/14/2011
A Three Component Latent Class Model for Robust Semiparametric Gene Discovery
Alfo', Marco / Farcomeni, Alessio / Tardella, Luca
Published Online: 01/21/2011
Log-Linear Modelling of Protein Dipeptide Structure Reveals Interesting Patterns of Side-Chain-Backbone Interactions
Hommola, Kerstin / Gilks, Walter R. / Mardia, Kanti V.
Published Online: 01/25/2011
A Robust Statistical Method to Detect Null Alleles in Microsatellite and SNP Datasets in Both Panmictic and Inbred Populations
Girard, Philippe
Published Online: 02/04/2011
Large Sample Approximations of Probabilities of Correct Evolutionary Tree Estimation and Biases of Maximum Likelihood Estimation
Susko, Edward
Published Online: 02/07/2011
Interval Estimation of Familial Correlations from Pedigrees
Mathew, George / Song, Yeunjoo / Elston, Robert
Published Online: 02/10/2011
Information Metrics in Genetic Epidemiology
Tritchler, David L / Sucheston, Lara / Chanda, Pritam / Ramanathan, Murali
Published Online: 02/23/2011
Linear Combination Test for Hierarchical Gene Set Analysis
Wang, Xiaoming / Dinu, Irina / Liu, Wei / Yasui, Yutaka
Published Online: 03/01/2011
Exploratory Analysis of Multiple Omics Datasets Using the Adjusted RV Coefficient
Mayer, Claus-Dieter / Lorent, Julie / Horgan, Graham W
Published Online: 03/02/2011
Application of the Lasso to Expression Quantitative Trait Loci Mapping
Brown, Andrew Anand / Richardson, Sylvia / Whittaker, John
Published Online: 03/14/2011
A Variance-Components Model for Distance-Matrix Phylogenetic Reconstruction
Gilks, Walter R / Nye, Tom M.W. / Lio, Pietro
Published Online: 03/30/2011
Imputation Estimators Partially Correct for Model Misspecification
Minin, Vladimir N. / O'Brien, John D. / Seregin, Arseni
Published Online: 04/19/2011
On the Statistical Properties of SGoF Multitesting Method
de Uña-Alvarez, Jacobo
Published Online: 04/21/2011
Meta-Analysis of Family-Based and Case-Control Genetic Association Studies that Use the Same Cases
Bagos, Pantelis G / Dimou, Niki L / Liakopoulos, Theodore D / Nikolopoulos, Georgios K
Published Online: 04/21/2011
A Non-Parametric Method for Detecting Specificity Determining Sites in Protein Sequence Alignments
Gilks, Walter R / Wang, Chinying
Published Online: 04/26/2011
Performance of Matrix Representation with Parsimony for Inferring Species from Gene Trees
Wang, Yuancheng / Degnan, James H
Published Online: 05/02/2011
Disequilibrium Coefficient: A Bayesian Perspective
Brentani, Helena / Nakano, Eduardo Y / Martins, Camila B / Izbicki, Rafael / Pereira, Carlos Alberto
Published Online: 05/03/2011
Analyzing Time-Course Microarray Data Using Functional Data Analysis - A Review
Coffey, Norma / Hinde, John
Published Online: 05/03/2011
The NBP Negative Binomial Model for Assessing Differential Gene Expression from RNA-Seq
Di, Yanming / Schafer, Daniel W / Cumbie, Jason S / Chang, Jeff H
Published Online: 05/12/2011
Inferring Gene Networks using Robust Statistical Techniques
Nadadoor, Venkat R. / Ben-Zvi, Amos / Shah, Sirish L.
Published Online: 05/13/2011
A Two-Stage Poisson Model for Testing RNA-Seq Data
Auer, Paul L. / Doerge, Rebecca W
Published Online: 05/16/2011
Quantifying the Relative Contribution of the Heterozygous Class to QTL Detection Power
McClosky, Benjamin / Ma, Xiwen / Tanksley, Steven D.
Published Online: 05/18/2011
The Joint Null Criterion for Multiple Hypothesis Tests
Leek, Jeffrey T / Storey, John D.
Published Online: 06/01/2011
Multiple Imputation of Missing Phenotype Data for QTL Mapping
Bobb, Jennifer F / Scharfstein, Daniel O. / Daniels, Michael J. / Collins, Francis S / Kelada, Samir
Published Online: 06/23/2011
Sparse Canonical Covariance Analysis for High-throughput Data
Lee, Woojoo / Lee, Donghwan / Lee, Youngjo / Pawitan, Yudi
Published Online: 07/06/2011
Comparison of Clinical Subgroup aCGH Profiles through Pseudolikelihood Ratio Tests
Engler, David / Shen, Yiping / Gusella, James / Betensky, Rebecca A.
Published Online: 07/07/2011
Random Forests for Genetic Association Studies
Goldstein, Benjamin A / Polley, Eric C / Briggs, Farren B. S.
Published Online: 07/12/2011
Deviance Information Criteria for Model Selection in Approximate Bayesian Computation
Francois, Olivier / Laval, Guillaume
Published Online: 07/12/2011
High-Dimensional Regression and Variable Selection Using CAR Scores
Zuber, Verena / Strimmer, Korbinian
Published Online: 07/18/2011
Surveying the Manifold Divergence of an Entire Protein Class for Statistical Clues to Underlying Biochemical Mechanisms
Neuwald, Andrew F.
Published Online: 08/04/2011
Smoothing Gene Expression Data with Network Information Improves Consistency of Regulated Genes
Dørum, Guro / Snipen, Lars / Solheim, Margrete / Saebo, Solve
Published Online: 08/09/2011
Entropy Based Genetic Association Tests and Gene-Gene Interaction Tests
de Andrade, Mariza / Wang, Xin
Published Online: 08/22/2011
Weighted Lasso with Data Integration
Bergersen, Linn Cecilie / Glad, Ingrid K. / Lyng, Heidi
Published Online: 08/29/2011
MA-SNP -- A New Genotype Calling Method for Oligonucleotide SNP Arrays Modeling the Batch Effect with a Normal Mixture Model
Wen, Yalu / Li, Ming / Fu, Wenjiang J
Published Online: 08/30/2011
A Modified Maximum Contrast Method for Unequal Sample Sizes in Pharmacogenomic Studies
Nagashima, Kengo / Sato, Yasunori / Hamada, Chikuma
Published Online: 09/07/2011
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